442 Open source projects that are alternatives of or similar to SumStatsRehab

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

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Genome inference from a population reference graph

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

🔬 Assemble large genomes using short reads

Parser and database to index the terpene profile of different strains of Cannabis from online databases

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Analysis pipelines for sequencing data

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code for reading and processing Allen Institute for Brain Science data

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

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HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

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Create regional association plots from GWAS or meta-analysis

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A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Comprehensive toolkit for generating various numerical features of protein sequences

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Snakemake-based workflow for detecting structural variants in WGS data

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GenomeTools genome analysis system.

A lightweight immune repertoire browser

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A collection of publications on comparison of high-throughput sequencing technologies.

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Single-Cell Analysis in Python. Scales to >1M cells.

Python API for comprehensive GWAS analysis using GEMMA

Estimate metagenomic coverage and sequence diversity

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memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

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Fast hash function for DNA sequences

Genome assembly evaluation tool

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Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

LAMBDA – the Local Aligner for Massive Biological DatA

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

A tutorial on methods of 16S analysis with QIIME 1

Model and predict short DNA sequence features with neural networks

Cuneiform distributed programming language

My own tools code for NGS data analysis (Next Generation Sequencing)

An open-access bioinformatics text

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Method to optimally select samples for validation and resequencing