442 Open source projects that are alternatives of or similar to SumStatsRehab

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Prosto is a data processing toolkit radically changing how data is processed by heavily relying on functions and operations with functions - an alternative to map-reduce and join-groupby

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An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

A faster lmm for GWAS. Supports GPU backend.

Genomics data visualization in Python by using matplotlib.

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Python API for comprehensive GWAS analysis using GEMMA

Fast hash function for DNA sequences

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Simple pure Python SAM parser and objects for working with SAM records

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Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Rapid determination of appropriate reference genomes.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Heritability, genetic correlation and functional enrichment estimation for case-control studies

Adjacency-constrained hierarchical clustering of a similarity matrix

Bystro genetic analysis (annotation, filtering, statistics)

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An R package for reproducible and automated ADMIXTOOLS analyses

📊 Codon usage tables in code-friendly format + Python bindings

Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data

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Feature extraction algorithm for genomic data

Classify sequencing reads using MinHash.

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🎯 Human transcription factor target genes.

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