284 Open source projects that are alternatives of or similar to TCC-GUI

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Give httr::progress the ability to talk to shinyWidgets::progressBar.

Feature extraction algorithm for genomic data

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Next-Gen Sequencing tools from the Horvath Lab

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

🖥️ Off-canvas elements for Shiny

Demo project of creating an interactive analytical tool for stock market using CAPM.

RNA-seq analysis pipeline for detection gene-fusions

Reference-based transcript discovery from long RNA read

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Some of my Shiny apps for fun

Version 2.1.0 released

R data products: Reports, Presentations, Apps, and API's

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Seamlessly design robust 'shiny' extensions

Streamlining SLAM-seq analysis with ultra-high sensitivity

🚀 用spring-cloud 基于tcc做的简单下单流程

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Shiny app for projecting retirement funds / benefits

Summer school course materials collection

Fast in-silico normalization algorithm for NGS data

R interface to ag-grid.

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

RNASeq pipeline

Glide.js component for Shiny apps

Dynamical systems methods for RNA velocity analysis

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

A shiny twitter conference dashboard

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

A wrapper of the jQuery plugin `jsTree`.

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

HTMLWidget wrapper of LineUp for Visual Analysis of Multi-Attribute Rankings

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

A versatile sequenced read processor for nanopore direct RNA sequencing

Example of a Shiny app with a React front-end

🐍 Snakefiles for common RNA-seq data analysis workflows.

FEELnc : FlExible Extraction of LncRNA

Multi-omics analysis protocols by Lyu.

Porting DESeq2 and DEXSeq into python via rpy2

A web app showing how much electricity is made from renewable sources in different parts of UK

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

Analytics Platform Shiny Server

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

Grid sytem for shiny apps or rmarkdown and to create htmlwidgets matrix

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Deep Learning based cell composition analysis with Scaden.

A pipeline for the computational evaluation of RNA-Seq data

Minimal R/Shiny Interface to ECharts.js

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Creating drag and drop elements in Shiny

CellNet: network biology applied to stem cell engineering

Template em Latex para TCC do curso de Engenharia de Computação da Univasf

Classe de trabalhos acadêmicos da Universidade Federal da Fronteira Sul baseada em abnTeX2

An R interface to amCharts 4

Example Shiny apps implementing CRUD database functionality

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.