591 Open source projects that are alternatives of or similar to visualqc

medical image visualization library and development toolkit

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Software platform for clinical neuroimaging studies

Slicer extensions index

Graph theory analysis of brain MRI data

Multi-platform, free open source software for visualization and image computing.

Multi-platform, free open source software for visualization and image computing.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

[CVPR 2021 - Oral] UnsupervisedR&R: Unsupervised Point Cloud Registration via Differentiable Rendering

RESTful PACS server with plugins

Core methods and structures for neuroscience research in Julia.

Brain Imaging Analysis Kit

Flexible Algorithms for Image Registration

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Deep Learning Toolkit for Medical Image Analysis

Awesome GAN for Medical Imaging

Example with Cortex V2 API

Automated mouse atlas propagation

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

MNE-CPP: A Framework for Electrophysiology

A lightweight python module to interact with atlases for systems neuroscience

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Automated 3D brain registration with support for multiple species and atlases.

NeuroInformatics Database

Segmentation of prostate from MRI scans

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Method container for computational neuroscience on brains.

MATLAB/Octave GIfTI Library

Convolutional AutoEncoder application on MRI images

A tool to align astronomical images based on asterism matching

Improved Wasserstein GAN (WGAN-GP) application on medical (MRI) images

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

Nanopore demultiplexing, QC and alignment pipeline

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

The MATLAB toolbox for MEG, EEG and iEEG analysis

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

A framework for developing neural network models for 3D image processing.

Automated 3D cell detection and registration of whole-brain images

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Framework for the reproducible processing of neuroimaging data with deep learning methods

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

Multi-modal Image Registration And Connectivity anaLysis

Self-Registration plugin for Kanboard

AMWA IS-04 NMOS Discovery and Registration Specification (Stable)

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

Partial Volume Correction in PET

Alignment of RNAs

U-Net for biomedical image segmentation

An End-to-End Machine Learning Library to Optimize AUC (AUROC, AUPRC).

Multi primitive-to-primitive (MP2P) ICP algorithms in C++

Resources for data driven neuroscientists.

parallelized blat with multi-threads support

Nanopore data analysis in R

Easily Arrange Images with Patchwork Alongside ggplot2 Figures.

Fast, safe and easy to use Cortex-M HAL Library, written in C++ 17