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Top 10 fmri open source projects

fit

Fusion ICA Toolbox (MATLAB)

✭ 13

matlab c M HTML gene analysis eeg pca cca fmri ica iva multi-modality mcca parallel-ica joint-ica

NeuroVault

Easy to use web database for statistical maps.

✭ 80

python HTML javascript open-source django fmri brain-imaging statmaps cognitive-concepts

nltools

Python toolbox for analyzing imaging data

✭ 94

python machine-learning python-toolbox toolbox multivariate fmri neuroimaging-data

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

✭ 56

python quality-control neuroscience medical-imaging registration alignment neuroimaging outlier-detection fmri mri-images cortex qc outlier-removal anatomical-mri freesurfer

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

✭ 40

matlab Jupyter Notebook python shell Dockerfile Singularity HTML neuroimaging fmri bids

stagin

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

✭ 34

python attention neuroimaging fmri connectome explainability neurips gnn graph-neural-network stagin neurips2021

brainGraph

Graph theory analysis of brain MRI data

✭ 136

r statistics neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography

connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

✭ 45

HTML python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv

PyNets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

✭ 114

python workflow optimization networkx ensemble-learning networks fmri decision-trees nilearn fuzzy-logic multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling

spatio-temporal-brain

A Deep Graph Neural Network Architecture for Modelling Spatio-temporal Dynamics in rs-fMRI Data

✭ 22

Jupyter Notebook python fmri explainability gnn temporal-convolutional-network wandb-agent

1-10 of 10 fmri projects