87 Open source projects that are alternatives of or similar to xcms

Quantitative features for mass spectrometry data

Public Workflows at GNPS

CoreMS is a comprehensive mass spectrometry software framework

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

LC-MS data processing tool for large-scale metabolomics experiments.

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

pyQms, generalized, fast and accurate mass spectrometry data quantification

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Reads a Magic: The Gathering card in front of a webcam and identifies it in an existing database of cards of a user-specified set.

This is the ensembldb development repository.

📚 R interface to the Bio-Formats library

pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

Import and summarize transcript-level estimates for gene-level analysis

Computable build reports, package metadata, and download stats from the Bioconductor project

Documentation for GNPS and related tools as written in mkdocs

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network

.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

A CUDA implementation of SIFT

Quantum mechanic mass spectrometry calculation program

HMMRATAC peak caller for ATAC-seq data

MaAsLin2: Microbiome Multivariate Association with Linear Models

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

Modernizr is a JavaScript library that detects HTML5 and CSS3 features in the user’s browser.

A R framework for pipeline benchmarking, with application to single-cell RNAseq

Thermo MSFileReader Python bindings

Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

Brings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.

Contribute Packages to Bioconductor

No description or website provided.

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

Feature Detection and Description with SIFT, SURF, KAZE, BRIEF, ORB, BRISK, AKAZE and FREAK using Python and OpenCV

A library for deisotoping and charge state deconvolution of complex mass spectra

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

Modeling and correcting fragment sequence bias for RNA-seq

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

The repo for LFQ-Analyst

Quantitative Analysis of Mass Spectrometry Data

A MALDI Mass Spectrometry Bioinformatics Platform

Reporting and exchange format for mass spectrometry quality control data

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …

Engine Detection Script for Browsers on Any Device

Online feature-extraction and classification algorithm that learns representations of input patterns.

Topographic edge detection of fault scarps and other landforms in digital elevation data

Webapplication for image stitching and aligning

tidy processing of biological sequences in R

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Using OpenCV to detect and mark face and eye features in videos and images. Anime and manga faces are also detected.

ezSIFT: An easy-to-use standalone SIFT library written in C/C++

Organic/biological mass spectrometry data analysis (development version).

MTG-Card-Reader 2.0, built as a webpage.

This python package is for transitioning bioconductor from SVN to git

Audio Fingerprinting and Recognition in Python using NVidia's CUDA

Convert between AnnData and SingleCellExperiment