All Git Users → bcgsc

12 open source projects by bcgsc

[ Open user page on Github ]

1. Abyss

🔬 Assemble large genomes using short reads

✭ 219

assembler bioinformatics science scaffold mpi bloom-filter openmp genome

2. Arcs

🌈Scaffold genome sequence assemblies using linked read sequencing data

✭ 67

assembler graph bioinformatics science scaffold genome

3. Mirna

microRNA profiling pipeline

✭ 47

perl

4. ntCard

Estimating k-mer coverage histogram of genomics data

✭ 69

C++Makefile M4 c shell hyperloglog cardinality-estimation k-mer-counting k-mer-frequency streaming-algorithms

5. biobloom

Create Bloom filters for a given reference and then use it to categorize sequences

✭ 66

C++c perl python Makefile M4 shell

6. xmatchview

🗻 Visualization of genome/gene sequence synteny

✭ 26

python TeX shell Dockerfile

7. SSAKE

🍶Genome assembly with short sequence reads

✭ 20

perl python shell dna-sequences genome-scaffolding short-reads sequence-assembly genome-assembler read-pairs

8. ntHash

Fast hash function for DNA sequences

✭ 66

C++c M4 bioinformatics genomics bloom-filter hash hash-algorithm hash-methods k-mer-hashing

9. pavfinder

🔍 Post Assembly Variants Finder

✭ 14

python

10. orca

🐳 Genomics Research Container Architecture

✭ 43

r Dockerfile shell Makefile

11. NanoSim

Nanopore sequence read simulator

✭ 156

python lua simulator genome transcriptome oxford-nanopore nanopore-sequencing

12. ntEdit

✏️ultra fast and scalable genome assembly polishing

✭ 56

C++c Makefile bloom-filter polishing draft-genome variant-detection

1-12 of 12 user projects