Top 3 minimap2 open source projects

Real-time species-typing visualisation for nanopore data.

✭ 13

javascript python HTML CSS shell nodejs bioinformatics nanopore bioinformatics-pipeline d3js minimap2 japsa

WebAssembly modules for genomics

✭ 115

c HTML shell Svelte javascript python bioinformatics genomics webassembly jq grep bedtools samtools bowtie2 minimap2 seqtk

SneakySnake

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs…

✭ 44

VHDL Verilog shell C++Cuda SystemVerilog fpga gpu smith-waterman needleman-wunsch sequence-alignment long-reads minimap2 short-reads hardware-accelerator sequence-aligner edlib pre-alignment-filtering wavefront-alignment

1-3 of 3 minimap2 projects