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Top 5 smith-waterman open source projects

seqalign

Collection of sequence alignment algorithms.

✭ 20

javascript smith-waterman needleman-wunsch string-distance hacktoberfest sequence-alignment string-alignment

strutil

Golang metrics for calculating string similarity and other string utility functions

diagonalsw

C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)

✭ 21

c CMake XSLT smith-waterman

minineedle

Needleman-Wunsch and Smith-Waterman algorithms in python

✭ 27

python Makefile algorithm smith-waterman needleman-wunsch alignment

SneakySnake

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs…

✭ 44

VHDL Verilog shell C++Cuda SystemVerilog fpga gpu smith-waterman needleman-wunsch sequence-alignment long-reads minimap2 short-reads hardware-accelerator sequence-aligner edlib pre-alignment-filtering wavefront-alignment

1-5 of 5 smith-waterman projects