118 Open source projects that are alternatives of or similar to Abra2

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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

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minimalistic nucleic acid folding

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

C library for high-throughput sequencing data formats

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Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

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Java utilities for Bioinformatics

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A robust model for quantitative comparison of ChIP-Seq data sets.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

tools for working with genome variation graphs

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

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Reference-based transcript discovery from long RNA read

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A fast 23andMe genome text file parser, now superseded by arv

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Estimation of per-individual inbreeding coefficients under a probabilistic framework

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List of IARC bioinformatics nextflow pipelines

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Analysis pipelines for sequencing data