All Projects → antigen.garnish → Similar Projects or Alternatives

408 Open source projects that are alternatives of or similar to antigen.garnish

immunedb
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Stars: ✭ 13 (-61.76%)
Mutual labels:  bioinformatics, immunology
immunarch
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Stars: ✭ 204 (+500%)
Mutual labels:  immunology, immunoinformatics
reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Stars: ✭ 64 (+88.24%)
Mutual labels:  bioinformatics
polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
Stars: ✭ 16 (-52.94%)
Mutual labels:  bioinformatics
bio tools
Useful bioinformatic scripts
Stars: ✭ 35 (+2.94%)
Mutual labels:  bioinformatics
crazydoc
Read DNA sequences from colourful Microsoft Word documents
Stars: ✭ 18 (-47.06%)
Mutual labels:  bioinformatics
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…
Stars: ✭ 86 (+152.94%)
Mutual labels:  bioinformatics
ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Stars: ✭ 79 (+132.35%)
Mutual labels:  bioinformatics
tiptoft
Predict plasmids from uncorrected long read data
Stars: ✭ 27 (-20.59%)
Mutual labels:  bioinformatics
full spectrum bioinformatics
An open-access bioinformatics text
Stars: ✭ 26 (-23.53%)
Mutual labels:  bioinformatics
motifmatchr
Fast motif matching in R
Stars: ✭ 25 (-26.47%)
Mutual labels:  bioinformatics
orfipy
Fast and flexible ORF finder
Stars: ✭ 27 (-20.59%)
Mutual labels:  bioinformatics
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Stars: ✭ 61 (+79.41%)
Mutual labels:  immunology
picardmetrics
🚦 Run Picard on BAM files and collate 90 metrics into one file.
Stars: ✭ 38 (+11.76%)
Mutual labels:  bioinformatics
chromap
Fast alignment and preprocessing of chromatin profiles
Stars: ✭ 93 (+173.53%)
Mutual labels:  bioinformatics
gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Stars: ✭ 91 (+167.65%)
Mutual labels:  bioinformatics
BioKEEN
A computational library for learning and evaluating biological knowledge graph embeddings
Stars: ✭ 41 (+20.59%)
Mutual labels:  bioinformatics
AMIDD
Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)
Stars: ✭ 13 (-61.76%)
Mutual labels:  bioinformatics
GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Stars: ✭ 64 (+88.24%)
Mutual labels:  bioinformatics
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Stars: ✭ 25 (-26.47%)
Mutual labels:  bioinformatics
ngstools
My own tools code for NGS data analysis (Next Generation Sequencing)
Stars: ✭ 28 (-17.65%)
Mutual labels:  bioinformatics
bistro
A library to build and execute typed scientific workflows
Stars: ✭ 43 (+26.47%)
Mutual labels:  bioinformatics
adversarial-relation-classification
Unsupervised domain adaptation method for relation extraction
Stars: ✭ 18 (-47.06%)
Mutual labels:  bioinformatics
clustergrammer2-notebooks
Examples using Clustergrammer2 to explore high-dimensional datasets.
Stars: ✭ 35 (+2.94%)
Mutual labels:  bioinformatics
CATT
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Stars: ✭ 17 (-50%)
Mutual labels:  bioinformatics
react-msa-viewer
React rerelease of MSAViewer
Stars: ✭ 15 (-55.88%)
Mutual labels:  bioinformatics
SVCollector
Method to optimally select samples for validation and resequencing
Stars: ✭ 20 (-41.18%)
Mutual labels:  bioinformatics
block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
Stars: ✭ 58 (+70.59%)
Mutual labels:  bioinformatics
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
Stars: ✭ 24 (-29.41%)
Mutual labels:  bioinformatics
netSmooth
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
Stars: ✭ 23 (-32.35%)
Mutual labels:  bioinformatics
snpsea
📊 Identify cell types and pathways affected by genetic risk loci.
Stars: ✭ 26 (-23.53%)
Mutual labels:  bioinformatics
epiviz
EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.
Stars: ✭ 65 (+91.18%)
Mutual labels:  bioinformatics
echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Stars: ✭ 13 (-61.76%)
Mutual labels:  bioinformatics
perbase
Per-base per-nucleotide depth analysis
Stars: ✭ 46 (+35.29%)
Mutual labels:  bioinformatics
PCG
𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
Stars: ✭ 20 (-41.18%)
Mutual labels:  bioinformatics
geneview
Genomics data visualization in Python by using matplotlib.
Stars: ✭ 38 (+11.76%)
Mutual labels:  bioinformatics
Introduction to the Unix Shell for biologists
Introduction to the Unix Shell for biologists
Stars: ✭ 16 (-52.94%)
Mutual labels:  bioinformatics
flexidot
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Stars: ✭ 73 (+114.71%)
Mutual labels:  bioinformatics
peppy
Project metadata manager for PEPs in Python
Stars: ✭ 29 (-14.71%)
Mutual labels:  bioinformatics
plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data
Stars: ✭ 27 (-20.59%)
Mutual labels:  bioinformatics
matam
Mapping-Assisted Targeted-Assembly for Metagenomics
Stars: ✭ 18 (-47.06%)
Mutual labels:  bioinformatics
StackedDAE
Stacked Denoising AutoEncoder based on TensorFlow
Stars: ✭ 23 (-32.35%)
Mutual labels:  bioinformatics
awesome-bioinformatics-formats
Curated list of bioinformatics formats and publications
Stars: ✭ 50 (+47.06%)
Mutual labels:  bioinformatics
SumStatsRehab
GWAS summary statistics files QC tool
Stars: ✭ 19 (-44.12%)
Mutual labels:  bioinformatics
MSFragger
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
Stars: ✭ 43 (+26.47%)
Mutual labels:  bioinformatics
referenceseeker
Rapid determination of appropriate reference genomes.
Stars: ✭ 65 (+91.18%)
Mutual labels:  bioinformatics
CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Stars: ✭ 34 (+0%)
Mutual labels:  bioinformatics
OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Stars: ✭ 60 (+76.47%)
Mutual labels:  bioinformatics
calour
exploratory and interactive microbiome analyses based on heatmaps
Stars: ✭ 22 (-35.29%)
Mutual labels:  bioinformatics
dna-sculpture
3D printed sculpture of a DNA molecule, showing my own genome
Stars: ✭ 22 (-35.29%)
Mutual labels:  bioinformatics
SemiBin
No description or website provided.
Stars: ✭ 25 (-26.47%)
Mutual labels:  bioinformatics
bystro
Bystro genetic analysis (annotation, filtering, statistics)
Stars: ✭ 31 (-8.82%)
Mutual labels:  bioinformatics
pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Stars: ✭ 47 (+38.24%)
Mutual labels:  bioinformatics
biskit
A Python platform for Structural Bioinformatics
Stars: ✭ 47 (+38.24%)
Mutual labels:  bioinformatics
Rcpi
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Stars: ✭ 22 (-35.29%)
Mutual labels:  bioinformatics
mulled
Mulled - Automatized Containerized Software Repository
Stars: ✭ 49 (+44.12%)
Mutual labels:  bioinformatics
awesome-genetics
A curated list of awesome bioinformatics software.
Stars: ✭ 60 (+76.47%)
Mutual labels:  bioinformatics
genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Stars: ✭ 23 (-32.35%)
Mutual labels:  bioinformatics
conda-env-builder
Build and maintain multiple custom conda environments all in once place.
Stars: ✭ 18 (-47.06%)
Mutual labels:  bioinformatics
dna-traits
A fast 23andMe genome text file parser, now superseded by arv
Stars: ✭ 64 (+88.24%)
Mutual labels:  bioinformatics
1-60 of 408 similar projects