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Top 8 immunology open source projects
immunedb
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
✭ 13
python
bioinformatics
database
immunology
antigen.garnish
No description or website provided.
✭ 34
r
Dockerfile
machine-learning
bioinformatics
immunology
peptides
immunoinformatics
DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
✭ 61
Jupyter Notebook
python
deep-learning
immunology
repertoire
tcr
tcr-repertoire
adaptive-immunity
shiny-iatlas
An interactive web portal for exploring immuno-oncology data
✭ 43
r
javascript
CSS
HTML
genomics
cancer
systems-biology
immunology
hlatyping
Precision HLA typing from next-generation sequencing data
✭ 28
Nextflow
python
HTML
Dockerfile
workflow
pipeline
dna
rna
immunology
hla
optitype
hla-typing
personalized-medicine
nf-core
immunarch
🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
✭ 204
r
CSS
bioinformatics
immunology
t-cell-receptor
tcr
rep-seq
single-cell
ig
immunoglobulin
immunoinformatics
tcr-repertoire
ig-repertoire
single-cell-analysis
bcr
immune-repertoire
bcr-repertoire
immune-repertoire-data
immune-repertoire-analysis
b-cell-receptor
repertoire-analysis
airr-analysis
IGoR
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
✭ 42
c
C++
perl
M4
shell
python
simulation
inference
immunology
igor
recombination
hypermutation
CytoPy
A data-centric flow/mass cytometry automated analysis framework
✭ 27
python
Dockerfile
machine-learning
framework
mongodb
clustering
document-database
immunology
flow-cytometry-analysis
flow-cytometry
mass-cytometry
cytometry
cytometry-data
cytometry-analysis-pipeline
immunophenotyping
1-8
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8
immunology projects