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BrainPrepPreprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
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MIRACLMulti-modal Image Registration And Connectivity anaLysis
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AD PredictionAlzheimer's Disease Prediction by using ResNet, AlexNet
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bg-atlasapiA lightweight python module to interact with atlases for systems neuroscience
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CilantroA lean C++ library for working with point cloud data
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3d PointcloudPapers and Datasets about Point Cloud.
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prime-re.github.ioOpen resource exchange platform for non-human primate neuroimaging
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BRAINSToolsA suite of tools for medical image processing focused on brain analysis
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Deep SegmentationCNNs for semantic segmentation using Keras library
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Brain-MRI-SegmentationSmart India Hackathon 2019 project given by the Department of Atomic Energy
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SimpleitkSimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
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SlicerMulti-platform, free open source software for visualization and image computing.
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DipyDIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
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mrivismedical image visualization library and development toolkit
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brainregAutomated 3D brain registration with support for multiple species and atlases.
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PyRhOA virtual optogenetics laboratory
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dicomifierA medical image converter
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SASHIMISASHIMI segmentation is a Matlab App for semi-automatic interactive segmentation of multi-slice images.
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U-TimeU-Time: A Fully Convolutional Network for Time Series Segmentation
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tfkbnufftA robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.
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nicMSlesionsEasy multiple sclerosis white matter lesion segmentation using convolutional deep neural networks.
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HipHop 2D3Dregistration2D/3D registration between CT/MRI or STL models and X-ray images (November 2018)
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geocoding地理编码技术,提供地址标准化和相似度计算。
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Basic-Image-ProcessingImplementation of Basic Digital Image Processing Tasks in Python / OpenCV
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hnnThe Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.
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SGP.NETC# SGP4 Satellite Prediction Library. Load satellites from TLEs, convert between coordinate systems and reference frames, observe satellites from ground stations, and more.
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medSegMedical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架
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pyRANSAC-3DA python tool for fitting primitives 3D shapes in point clouds using RANSAC algorithm
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segDGM CNNSegment Deep Gray Matter on QSM images using 3D CNN
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DeepSegmentorSequence Segmentation using Joint RNN and Structured Prediction Models (ICASSP 2017)
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pygrappaPython implementations of GRAPPA-like algorithms.
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vessegBrain vessel segmentation using 3D convolutional neural networks
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TensorFlow CNNExample CNN on CIFAR-10 classification
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jemaljemal gem – Ruby interface to jemalloc
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NeuTuSoftware package for neuron reconstruction and visualization
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lung-image-analysisA basic framework for pulmonary nodule detection and characterization in CT
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anomaly-segThe Combined Anomalous Object Segmentation (CAOS) Benchmark
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