774 Open source projects that are alternatives of or similar to Awesome Bioinformatics Benchmarks

Fast genome-wide functional annotation through orthology assignment

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

Utility library for functional programming in Lua

🔍 A helpful checklist/collection of Search Engine Optimization (SEO) tips and techniques.

ECG classification programs based on ML/DL methods

Simulate genealogical trees and genomic sequence data using population genetic models

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

C library for high-throughput sequencing data formats

Highly adaptable common interface for proteomics search and de novo engines

Create regional association plots from GWAS or meta-analysis

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

PHP collection extensions - PHP Version 7.x

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

My personal goldendict-dictionaries collection

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Sample search by metadata and features

Comprehensive toolkit for generating various numerical features of protein sequences

WebLogo 3: Sequence Logos redrawn

An efficient FASTQ manipulation suite

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

🐋 Web 前端常用插件

The Microbiome Interpretable Temporal Rule Engine

A curated list of awesome Bioinformatics libraries and software.

A simplified pipeline for ctDNA sequencing data analysis

Randomly subsample sequencing reads to a specified coverage

De novo genome assembly and multisample variant calling

Collection of awesome color schemes for Neo/vim, merged for quick use.

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Collection pipeline library for PHP

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

Vue component for efficiently rendering large collection data

UGENE is free open-source cross-platform bioinformatics software

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Global Biotic Interactions provides access to existing species interaction datasets

A PHP library for representing and manipulating collections.

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Build and maintain multiple custom conda environments all in once place.

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Single-Cell Analysis in Python. Scales to >1M cells.

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

A list of awesome lightweight websites without all the bloat

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Structural variant toolkit for VCFs

Biostar Q&A

Estimate metagenomic coverage and sequence diversity

Data collection store for MobX

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Repository for Shoko Desktop

This is a collection of resources that shed light on the inner workings of Kubernetes

A Swift implementation of 30-seconds-of-code: A curated collection of useful Swift 4 snippets that you can understand in 30 seconds or less.

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

🤘 Looking for about Ionic Framework?

compacted de Bruijn graph construction in low memory

💯 The most useful python snippets

👔👗🕶️🎩 Cool resources about Fashion + AI! (papers, datasets, workshops, companies, ...) (constantly updating)

Characterization of Germline variants