795 Open source projects that are alternatives of or similar to Awosome Bioinformatics

Course Curriculum and Resources for Learning Data Science in 3 Months

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Compute N50/NG50 and auN/auNG

Next generation sequencing reads de novo assembler.

MView extracts and reformats the results of a sequence database search or multiple alignment.

A lightweight immune repertoire browser

COVID-19 World is yet another Project to build a Dashboard like app to showcase the data related to the COVID-19(Corona Virus).

A Practical and Efficient NCBI Taxonomy Toolkit

MMseqs2 app to run on your workstation or servers

A collection of publications on comparison of high-throughput sequencing technologies.

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

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A package for designing compact and comprehensive capture probe sets.

Merge and Acquisitions Prediction based on M&A information from Crunchbase.

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

R on Apache Spark (SparkR) tutorials for Big Data analysis and Machine Learning as IPython / Jupyter notebooks

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

NCAA brackets in JSON form

data-disasters.netlify.app/

A Portfolio of my Data Science Projects

Read and write FASTQ and FASTA efficiently from Python

UNCURL is a tool for single cell RNA-seq data analysis.

Fast hash function for DNA sequences

🔍 Offline Analyzer for extracting features, artifacts and IoCs from Windows, Linux, Android, iPhone, Blackberry, macOS binaries, emails and more

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

📖 [译] 利用 Python 进行数据分析 · 第 2 版

Golang for Bioinformatics

Proof-of-concept seq-to-graph mapper and graph generator

A Kotlin DSL and library to create and plot RNA 2D structures

Single-Cell Analysis in Python. Scales to >1M cells.

Text Similarity Applied to resume, to compare Resumes with Job Descriptions and create a score to rank them. Similar to an ATS.

scikit-learn: machine learning in Python

Open source Java library for computational proteomics

A full spaCy pipeline and models for scientific/biomedical documents.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Estimate metagenomic coverage and sequence diversity

Multi-Class Text Classification for products based on their description with Machine Learning algorithms and Neural Networks (MLP, CNN, Distilbert).

Roadmap to becoming an Artificial Intelligence Expert in 2021

A collection of Jupyter notebooks exploring different datasets.

🐣 locally query the ncbi taxonomy

📊 Codon usage tables in code-friendly format + Python bindings

Rapid large-scale prokaryote pan genome analysis

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Classify sequencing reads using MinHash.

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Efficient variant-call data storage and retrieval library using the TileDB storage library.

OctoSQL is a query tool that allows you to join, analyse and transform data from multiple databases and file formats using SQL.

ESC Team's scorecard tools

Programming with Python

📖 每一个伟大的思想和行动都有一个微不足道的开始

Protein Graph Library

The Cyber Swiss Army Knife - a web app for encryption, encoding, compression and data analysis

A tool to circularize genome assemblies

A library for generating an interactive SVG visualization of CWL workflows

Phylogenetic trees in Julia