333 Open source projects that are alternatives of or similar to bio-dockers

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Analysing Capture Seq Count Data

Phage-Host Interaction Search Tool

Big Compute Learning Labs

High-performance error correction for Illumina resequencing data

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Easy genetic ancestry predictions in Python

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Introduction to the Command Line for Genomics

Population assignment analysis using R

An easy-to-use way for running Galaxy workflows.

DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

A workflow for creating small NGS test data sets, useful for continuous integration.

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

A tool for fast and accurate summarizing of variant calling format (VCF) files

ntHash implementation in Rust

Forward-time simulation in Python using fwdpp

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Seven Bridges Genomics aligner/caller debugging and analysis tools

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

xHLA: Fast and accurate HLA typing from short read sequence data

simple viewer for variant call format using htslib

A DNA Sequence Alignment/Map (SAM) library for Clojure

phenol: Phenotype ontology library

JavaScript VisualizationTools

A secure encryption tool for genomic data

cython + htslib == fast VCF and BCF processing

Numerical Encoding for Human Genetic Variants

Large genome reassembly based on Hi-C data, continuation of GRAAL

Performant Pythonic GenomicRanges

Bead-based single-cell atac processing

🔬 BEDOPS: high-performance genomic feature operations

The GenePattern Server web application

Fast large scale matrix visualization for the web.

myVCF: a web-based platform for target and exome mutations data management

Proof-of-concept seq-to-graph mapper and graph generator

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Intuitive local web frontend for the BLAST bioinformatics tool

Multi-sample somatic variant caller

Ten Quick Tips for Deep Learning in Biology

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A genome browser that shows long reads and complex variants better

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

Deep learning infrastructure for bioinformatics

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

A fast tool for hybrid genome assembly of long and short reads

Reads simulator

An automated RNA-seq pipeline using Nextflow

Rapid large-scale prokaryote pan genome analysis

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

a pileup library that embraces the huge

An open-source toolkit for large-scale genomic analysis

Nextflow basic tutorial for newbie users

Viral genomics analysis pipelines

Finds SNP sites from a multi-FASTA alignment file

Tools to work with variant call format files

structural variant calling and genotyping with existing tools, but, smoothly.

Examples to get started with IBM Functional Genomics Platform