1152 Open source projects that are alternatives of or similar to bistro

Data intensive science for everyone.

DEPRECIATED! Please use nf-core/tools instead

Robust and efficient workflows using a simple language agnostic approach

Robust, flexible and resource-efficient pipelines using Go and the commandline

UGENE is free open-source cross-platform bioinformatics software

A repository for setting up a RNAseq workflow

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A library for generating an interactive SVG visualization of CWL workflows

Example workflows for the drake R package

A collection of scripts and notes related to genomics and bioinformatics

🔬 BEDOPS: high-performance genomic feature operations

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Snakemake-based workflow for detecting structural variants in WGS data

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Analysis pipelines for sequencing data

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Use this Property Manager CLI to automate Akamai property changes and deployments across many environments.

An open source platform for managing and analyzing biomedical big data

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Function-oriented Make-like declarative workflows for R

Pipeline is a package to build multi-staged concurrent workflows with a centralized logging output.

🍴 Web applications made easy. Since 2011.

NLP pipeline software using common workflow language

ATAC-seq peak-calling, QC and differential analysis pipeline

contains handy groovy workflow-libs scripts

Machine is a workflow/pipeline library for processing data

An R-focused pipeline toolkit for reproducibility and high-performance computing

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

Cuneiform distributed programming language

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

A cross-platform command-line tool for executing jobs in parallel

The Microbiome Interpretable Temporal Rule Engine

A DSL for data-driven computational pipelines

A simplified pipeline for ctDNA sequencing data analysis

Workflow Description Language - Specification and Implementations

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Streamlining SLAM-seq analysis with ultra-high sensitivity

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Stacked Denoising AutoEncoder based on TensorFlow

Per-base per-nucleotide depth analysis

Useful bioinformatic scripts

Use Alfred to browse through your Microsoft OneNote notebooks, section groups and sections and then jump to them instantly.

A curated list of awesome bioinformatics software.

📑 My approach to an analysis or product produced with R

M-Lab ingestion pipeline

🚀 Build and Publish Your Hugo Site to GitHub Pages 🚀

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

GWAS summary statistics files QC tool

Prometheus spot instance exporter to monitor AWS instance termination with Hollowtrees

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

Genotyping of segregating mobile elements insertions

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

An action that allows you to check whether your npm package version has been updated

My own tools code for NGS data analysis (Next Generation Sequencing)

Lightweight workflow engine microservice implement BPMN 2.0

Rapid determination of appropriate reference genomes.