467 Open source projects that are alternatives of or similar to brainGraph

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Multi-modal Image Registration And Connectivity anaLysis

A curated list of awesome network analysis resources.

BIDScoin converts your source-level neuroimaging data to BIDS

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

medical image visualization library and development toolkit

Software platform for clinical neuroimaging studies

Core methods and structures for neuroscience research in Julia.

The MATLAB toolbox for MEG, EEG and iEEG analysis

Utility functions for working with DICOM and BIDS neuroimaging data

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

MATLAB/Octave GIfTI Library

Dynamic Network Analysis library

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

Framework for the reproducible processing of neuroimaging data with deep learning methods

An introduction to network analysis and applied graph theory using Python and NetworkX

📚 social networks from novels

Magnetic resonance imaging and tractography with R

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

Network Analysis in Python

MATLAB / Octave tools for BIDS datasets

NeuroInformatics Database

Method container for computational neuroscience on brains.

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Python 3 library for analysis of neuroanatomical data

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

C++ library for simulation of multiscale neural field dynamics

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

DEMON: a local-first discovery method for overlapping communities.

Easy to use web database for statistical maps.

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Python wrapper around GraphBLAS

Analyze Data with Pandas-based Networks. Documentation:

Brain Imaging Analysis Kit

Collaborative Annotation Toolkit for Massive Amounts of Image Data

Preprocessing and reconstruction of diffusion MRI

Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.

Master repository for the JGraphT project

CLI tool which looks up hardware vendor names for network devices based on the macvendors.com API

Database for experimental neuroscience laboratories

Equilibrium Expectation for ERGM parameter estimation for large directed networks

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

The NeuroMorph analysis and visualization toolkit

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

STriP Net: Semantic Similarity of Scientific Papers (S3P) Network

Supporting data for BAD TRAFFIC Citizen Lab report.

We here are very big fans of NetworkX as a graph library and its comprehensive set of graph algorithms. For many though, working with NetworkX involves a steep learning curve. This guide is designed as an aid for beginners and experienced users to find specific tips and explore the world of complex networks.

R package to create, modify and visualize graphs with multiple layers.

NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session

A block modeling system for cognitive neuroscience

The Arbor multi-compartment neural network simulation library.

Graphs and passing networks in football.

Graph algorithms written in Go