421 Open source projects that are alternatives of or similar to CAFE5

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

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Improving genome bins through the combination of different binning programs

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Simple pure Python SAM parser and objects for working with SAM records

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MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

The BridgeDb Library source code

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

GNparser normalises scientific names and extracts their semantic elements.

🎯 Human transcription factor target genes.

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

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Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Feature extraction algorithm for genomic data

The Ensembl Compara Perl API and SQL schema

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Fast hash function for DNA sequences

Alignment editor for Mac OS X

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Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

Ploidy agnostic phasing pipeline and algorithm

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

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booster.c3bi.pasteur.fr

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

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A package for designing compact and comprehensive capture probe sets.