447 Open source projects that are alternatives of or similar to Fgbio

BACNET is a Java based platform to develop website for multi-omics analysis

GeneValidator: Identify problems with predicted genes

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

No description or website provided.

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

FastQC port to Qt5: A quality control tool for high throughput sequence data.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Predict plasmids from uncorrected long read data

Genomics Extension for SQLite

Examples using Clustergrammer2 to explore high-dimensional datasets.

课题组每周研讨会

VirNet: A deep attention model for viral reads identification

Single cell perturbation prediction

🚦 Run Picard on BAM files and collate 90 metrics into one file.

A lightweight immune repertoire browser

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

A collection of publications on comparison of high-throughput sequencing technologies.

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A library to build and execute typed scientific workflows

Estimation of per-individual inbreeding coefficients under a probabilistic framework

Fast motif matching in R

A curated list of awesome Bioinformatics libraries and software.

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

A full spaCy pipeline and models for scientific/biomedical documents.

A curated list of awesome bioinformatics software.

Application for making ENCODE Blacklists

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

Estimate metagenomic coverage and sequence diversity

Read DNA sequences from colourful Microsoft Word documents

Post-analysis of immune repertoire sequencing data

Fast alignment and preprocessing of chromatin profiles

Javascript full-stack framework for Big Data visualisation and analysis

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Curated list of bioinformatics formats and publications

Next generation sequencing reads de novo assembler.

A computational library for learning and evaluating biological knowledge graph embeddings

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Bioinformatics Workbook repository

Provide R access to the NCI Genomic Data Commons portal.

A wrapper for the EnsEMBL REST API

Useful bioinformatic scripts

dna2vec: Consistent vector representations of variable-length k-mers

My own tools code for NGS data analysis (Next Generation Sequencing)

Race and ethnicity Imputation from Disease history with Deep LEarning

Build and maintain multiple custom conda environments all in once place.

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Earl Grey: A fully automated TE curation and annotation pipeline

Comprehensive toolkit for generating various numerical features of protein sequences

No description or website provided.

A fast 23andMe genome text file parser, now superseded by arv

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Syntax highlighting for computational biology

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag