637 Open source projects that are alternatives of or similar to gene-oracle

A class scheduler using adaptive-elitist genetic algorithm.

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

RNA-seq analysis pipeline for detection gene-fusions

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

Summer school course materials collection

Reference-based transcript discovery from long RNA read

Classify sequencing reads using MinHash.

R package for solving three-dimensional bin packing problem

This repository belongs to the youtube videos "What are Genetic Algorithms" (https://youtu.be/uQj5UNhCPuo) and "Genetic Algorithm from Scratch in Python" (https://youtu.be/nhT56blfRpE). If you haven't seen it, please consider watching part one of this series, to get a better understanding of this code.

In the coming weeks this plans to become a Gekko plugin that reacts to market changes, finding and running only the most profitable strategies.

Single Cell Analysis Pipelines

A public python implementation of the DeepHyperNEAT system for evolving neural networks. Developed by Felix Sosa and Kenneth Stanley. See paper here: https://eplex.cs.ucf.edu/papers/sosa_ugrad_report18.pdf

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

A genetic algorithm to solve the Travelling Salesman Problem, implemented in Python. Made by Jack Frigaard, modified by Mauricio Aizaga

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

A Kotlin DSL and library to create and plot RNA 2D structures

Neuroevolution demo through TensorFlow.js, Neataptic, and Box2D

dysgu-SV is a collection of tools for calling structural variants using short or long reads

A metaheuristic optimization framework

Read and write FASTQ and FASTA efficiently from Python

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

FMI-compliant Model Estimation in Python

使用浅层神经网络和遗传算法训练一个可以自动驾驶小车的Demo

Modern Fortran Edition of the Pikaia Genetic Algorithm

Multi-Objective GP for Automated Repair of Java

A permissively licensed library designed to replace Illumina's Experiment Manager

Gene fusion detection and visualization

🎯 Human transcription factor target genes.

CWL tools and workflows for GGR

Genomics using open source tools, running on GCP or AWS

A tool to identify, orient, trim and rescue full length cDNA reads

Open source Java library for computational proteomics

two soldiers shooting at each other, controlled by a neural network with a genetic algorithm.

Use genetic algorithms to train flappy bird

Go evolutionary algorithm is a computer library for developing evolutionary and genetic algorithms to solve optimisation problems with (or not) many constraints and many objectives. Also, a goal is to handle mixed-type representations (reals and integers).

Differential Gene Correlation Analysis

Lightweight and Fast; RNA-seq quantification at the event-level

Toolkit for preparing genomes for submission to NCBI

GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.

An R package for optimization using genetic algorithms

This is the repository of codes written in class.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Derivative-Free Optimization Method for Global Optimization (C++)

Ploidy agnostic phasing pipeline and algorithm

Computational Analysis of Novel Drug Opportunities

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

The Ensembl Compara Perl API and SQL schema

A general-purpose pythonic genetic algorithm.

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

智能算法-遗传算法、蚁群算法、粒子群算法实现。实现版本Java,Python,MatLab多版本实现

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Searching global optima with firefly algorithm and solving traveling salesmen problem with genetic algorithm

Fast hash function for DNA sequences

Building and training artificial neural networks (regression or classification) using the genetic algorithm.

A simple command-line tool to download data from Joint Genome Institute databases

A faster lmm for GWAS. Supports GPU backend.

A package for designing compact and comprehensive capture probe sets.

Using genetic algorithm and neural networks to teach AI to play flappy bird.