867 Open source projects that are alternatives of or similar to hotsub

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

An open source platform for managing and analyzing biomedical big data

GCP Essentials for Bioinformatics Researchers

Robust, flexible and resource-efficient pipelines using Go and the commandline

Global Biotic Interactions provides access to existing species interaction datasets

Cuneiform distributed programming language

A DSL for data-driven computational pipelines

Genomics using open source tools, running on GCP or AWS

Data intensive science for everyone.

[Experimental] Workflow Definition Language (WDL) to CWL

EtlFlow is an ecosystem of functional libraries in Scala based on ZIO for writing various different tasks, jobs on GCP and AWS.

An image classification app boilerplate to serve your deep learning models asap!

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Computational Analysis of Novel Drug Opportunities

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

📁 Extract, Transform, Load (ETL) 👷 refers to a process in database usage and especially in data warehousing. This repository contains a starter kit featuring ETL related work.

A faster lmm for GWAS. Supports GPU backend.

Create cloud-native resources on all the major cloud providers, completely free of charge. This project is currently under heavy development.

A permissively licensed library designed to replace Illumina's Experiment Manager

Local emulator for Google Cloud Storage

📗 Terraform Module for Nomad clusters with Consul on GCP

Improving genome bins through the combination of different binning programs

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

GitHub Action for Infracost. Shows cloud cost estimates for Terraform in pull requests.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Ruby's missing background and batch processing system

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Library packs for google cloud functions

Typescript data model for Common Workflow Language

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

The Ensembl Compara Perl API and SQL schema

A distributed transaction framework that supports multiple languages, supports saga, tcc, xa, 2-phase message, outbox patterns.

A simple command-line tool to download data from Joint Genome Institute databases

The BridgeDb Library source code

Docker machine provider for Terraform

Classify sequencing reads using MinHash.

Resources on preparing for Google Cloud Associate Cloud Engineer certification

GNparser normalises scientific names and extracts their semantic elements.

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Programmatic API to Docker Machine.

Real-Time Event Streaming & Change Data Capture

⚡ Node.js library to run and orchestrate background jobs with Zenaton Workflow Engine

IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.

Single Cell Analysis Pipelines

Cloudbuild pipeline visualizer with graphviz

Easy groupcache clustering on GCE

Documentation and implementation of telemetry ingestion on Google Cloud Platform

Notifier images for Cloud Build, complete with build status filtering and Google Secret Manager integration

Awesome backup tools for MongoDB w/ docker integration

use terraform, deploy yourself a pcf

An R package for reproducible and automated ADMIXTOOLS analyses

Workflow Management for Biomedical exploration

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Share local folders with a Docker Machine VM

Resources for the 30 Days of GCP program

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

Serverless Indonesian Identity E-KTP OCR with Google Cloud Platform (GCP) - Cloud Functions, Cloud Storage, and Cloud PubSub