315 Open source projects that are alternatives of or similar to hts-python

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

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Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.

mgatk: mitochondrial genome analysis toolkit

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Bioinformatics workflows developed for and used on the St. Jude Cloud project.

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Hands-On Serverless Applications with Go, published by Packt.

Clustering scRNAseq by genotypes

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Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

Python-based UCSC genome browser snapshot-taker and gallery-maker

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Big Compute Learning Labs

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Interactive assembly and analysis of RAD-seq data sets

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Improve the quality of a denovo assembly by scaffolding and gap filling

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