437 Open source projects that are alternatives of or similar to ideal

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

List of resources for learning R

📊 Graphical User Interface for TCC package

Fast in-silico normalization algorithm for NGS data

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Make rapid visualizations of RNA-seq data in R

An easy-to-use way for running Galaxy workflows.

Porting DESeq2 and DEXSeq into python via rpy2

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

GREIN : GEO RNA-seq Experiments Interactive Navigator

CloudCV GSoC 2021 Ideas

Discrete Distributional Differential Expression

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

MAVIS: Meta Analysis via Shiny

No description or website provided.

https://rinterface.com/shiny/talks/RPharma2020/

A Shiny/R project able to visualize charts about Bitcoin price and performances.

Track changes in data with ease

Rmarkdown templates for reproducible science

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

interactive Multi Objective K-mer Analysis

FEELnc : FlExible Extraction of LncRNA

IMS Machine Learning Lab publications.

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

Materials for the Shiny Train the Trainer workshop

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

No description or website provided.

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

A DYOR engine for the Bitcoin Lightning Network

The Shiny map for Local Authorites

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Interactive visualizations for Dr. Richard Baraniuk's open-source "Signals and Systems" textbook. R / Shiny.

A phylogenetic profile analysis tool

RNA-seq analysis pipeline for detection gene-fusions

Reproducible Self-Publishing - Demo Publications in the Most Common Formats

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

An interactive web application for the analysis of sports data from GPS-enabled tracking devices

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

Cascading filter modules for Shiny

An shiny input widget for selecting directories

🐍 Snakefiles for common RNA-seq data analysis workflows.

Summer school course materials collection

Fit generalized linear models in python.

A timeInput widget for Shiny

Quantitative features for mass spectrometry data

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

📜 Scrollytelling in R, because its easier than D3™

R Shiny application for interactive analysis of networks created by vosonSML.

Short course on reproducible science: what, why, how

an R/shiny application for creation of Circos plot interactively

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

Reference-based transcript discovery from long RNA read

An Object-Oriented approach to Shiny modules