642 Open source projects that are alternatives of or similar to mitre

Curated list of bioinformatics formats and publications

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Full Bayesian Inference for Hidden Markov Models

Provide R access to the NCI Genomic Data Commons portal.

micca - MICrobial Community Analysis

Useful bioinformatic scripts

R package for microbiome biomarker discovery

My own tools code for NGS data analysis (Next Generation Sequencing)

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Find nodes in hierarchical clustering that are statistically significant

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

An open-access bioinformatics text

MMseqs2 app to run on your workstation or servers

Unsupervised domain adaptation method for relation extraction

Qiita - A multi-omics databasing effort

Fast and flexible ORF finder

No description or website provided.

Bystro genetic analysis (annotation, filtering, statistics)

Mapping-Assisted Targeted-Assembly for Metagenomics

Estimating effective elastic thickness of the lithosphere

BACNET is a Java based platform to develop website for multi-omics analysis

Method to optimally select samples for validation and resequencing

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

📊 Identify cell types and pathways affected by genetic risk loci.

Compute N50/NG50 and auN/auNG

Forecasting 🇫🇷 elections with Bayesian statistics 🥳

nessai: Nested Sampling with Artificial Intelligence

Simple pure Python SAM parser and objects for working with SAM records

WebGL Heatmap Viewer for Big Data and Bioinformatics

Examples using Clustergrammer2 to explore high-dimensional datasets.

Read DNA sequences from colourful Microsoft Word documents

A repo with homeworks and labs from a course on applied stats taken by me during my bachelor's degree in MIPT, Ru. Course authors: Andrii Hraboviy, @andriygav and Oleg Bakhteev, @bahleg.

Version 5 of the CAFE phylogenetics software

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Feature extraction algorithm for genomic data

Compare different differential abundance and expression methods

🎯 Human transcription factor target genes.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Various functions for analysis of microbial community data

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Project metadata manager for PEPs in Python

Read and write FASTQ and FASTA efficiently from Python

Helper functions for brmsfit objects (DEPRECATED)

Fast hash function for DNA sequences

The Ontology for Biomedical Investigations

Sequential Monte Carlo algorithm for approximation of posterior distributions.

Genotyping of segregating mobile elements insertions

Udacity Machine Learning Nano degree Program Project Predicting Passenger Survival

This repository contains notes and projects of Data scientist track from dataquest course work.

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

A Kotlin DSL and library to create and plot RNA 2D structures

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

A probabilistic programming language that combines automatic differentiation, automatic marginalization, and automatic conditioning within Monte Carlo methods.

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Fast alignment and preprocessing of chromatin profiles

Per-base per-nucleotide depth analysis

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

DOM Text Based Multiple Sequence Alignment Library