848 Open source projects that are alternatives of or similar to Ngless

Official code repository for GATK versions 4 and up

Java utilities for Bioinformatics

A package for designing compact and comprehensive capture probe sets.

Data intensive science for everyone.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A collection of scripts and notes related to genomics and bioinformatics

UGENE is free open-source cross-platform bioinformatics software

Tools to process and analyze deep sequencing data.

Collection of scripts for bacterial genomics

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

A high-performance, Pythonic language for bioinformatics

annotate a VCF with other VCFs/BEDs/tabixed files

A React web application to query and share any PostgreSQL database.

An analysis and visualization platform for 'omics data

GCP Essentials for Bioinformatics Researchers

Efficient pythonic random access to fasta subsequences

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

A modern genome browser built with JavaScript and HTML5.

Python library to facilitate genome assembly, annotation, and comparative genomics

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

C library for high-throughput sequencing data formats

Ultra-fast and memory-efficient (meta-)genome assembler

Genomics Extension for SQLite

Python and C++ code for reading and writing genomics data.

Scalable genomic data analysis.

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Antimicrobial Resistance Identification By Assembly

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Example client programs for Saphetor's VarSome annotation API

A comprehensive tutorial about GWAS and PRS

An open source platform for managing and analyzing biomedical big data

A collection of publications on comparison of high-throughput sequencing technologies.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

A fast and sensitive gapped read aligner

Signal-level algorithms for MinION data

The next version of bwa-mem

Plant image analysis using OpenCV

Bioinformatics library for .NET

Scripts to download genomes from the NCBI FTP servers

This library tackles the construction and efficient execution of computational chemistry workflows

(No maintenance) Detect gene fusion directly from raw fastq files

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Data and analysis for the Splatter paper

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Analysis pipelines for sequencing data

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

A robust model for quantitative comparison of ChIP-Seq data sets.

🌈Scaffold genome sequence assemblies using linked read sequencing data

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Flexible genotype query among 30,000+ samples whole-genome

A fast whole-genome aligner based on de Bruijn graphs

Model and predict short DNA sequence features with neural networks

An interactive web tool for quality control of DNA sequencing data

Bayesian genotyper for structural variants

A simplified pipeline for ctDNA sequencing data analysis

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI