74 Open source projects that are alternatives of or similar to Ngsdist

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An easy-to-use way for running Galaxy workflows.

List of IARC bioinformatics nextflow pipelines

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A collection of Galaxy-related training material

A set of command line tools based on R and JavaScript.

Collection of scripts for bacterial genomics

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

A scalable bacterial genome assembly, annotation and analysis pipeline

myVCF: a web-based platform for target and exome mutations data management

R package for analyzing single-cell RNA-seq data

Scalable long read self-correction and assembly polishing with multiple sequence alignment

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Project metadata manager for PEPs in Python

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

A simple tool to calculate reads number and total base count in FASTQ file

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Rare variant test software for next generation sequencing data

Efficient handling of FASTQ files from Python

A Java API for high-throughput sequencing data (HTS) formats.

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Tools for working with genomic and high throughput sequencing data.

Faster BWA-MEM2 using learned-index

🐳 Bio-dockers: dockerized bioinformatic tools

NGLess: NGS with less work

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

A library for manipulating bioinformatics sequencing formats in Apache Spark

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Multi-sample somatic variant caller

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Ultrafast sequence typing and gene detection from NGS raw reads

Java utilities for Bioinformatics

My bioinfo toolbox

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

An automated RNA-seq pipeline using Nextflow

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

Reference-based transcript discovery from long RNA read

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

C library for high-throughput sequencing data formats

A workflow for creating small NGS test data sets, useful for continuous integration.

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Customizable workflows based on snakemake and python for the analysis of NGS data

Whole Exome/Whole Genome Sequencing alignment pipeline

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A simplified pipeline for ctDNA sequencing data analysis

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

RNA-seq workflow using STAR and DESeq2

Method to optimally select samples for validation and resequencing

Utilities for analyzing next generation sequencing data.

Data intensive science for everyone.

Tools to process and analyze deep sequencing data.

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

A package for designing compact and comprehensive capture probe sets.

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay