567 Open source projects that are alternatives of or similar to ngs_pipeline

UGENE is free open-source cross-platform bioinformatics software

List of IARC bioinformatics nextflow pipelines

A simple tool to calculate reads number and total base count in FASTQ file

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

An automated RNA-seq pipeline using Nextflow

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A simplified pipeline for ctDNA sequencing data analysis

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Efficient handling of FASTQ files from Python

Multi-sample somatic variant caller

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Project Manager for NGS data analysis

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Snakemake based pipeline for RNA-Seq analysis

Whole Exome/Whole Genome Sequencing alignment pipeline

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

A workflow for creating small NGS test data sets, useful for continuous integration.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

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No description or website provided.

Jenkins Pipeline As Yaml Plugin

Erlang Parse Transforms Including Fold (MapReduce) comprehension, Elixir-like Pipeline, and default function arguments

Stratum aims to be a scalable, reliable panel better than most solutions on the market made for selling virtual machines. It works by utilizing Proxmox's API to automatically manage/deploy virtual machines. Stratum is made in Laravel.

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Pipeline: GitHub

Interactive pipeline filtering in PowerShell (a port of peco).

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

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Ultrafast sequence typing and gene detection from NGS raw reads

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A React component for resizable split views

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A pixel classification based multiplexed image segmentation pipeline

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

A complete admin board template with a large variety of elements and components, based on blexar CSS framework.

Saisoku is a Python module that helps you build complex pipelines of batch file/directory transfer/sync jobs.

Automatically transfer issues in pipeline by commit message

Maya Python API 3.0

Deploy a secured, clustered, auto-scaling NiFi service in AWS.

Tensorflow object detection with tracking based on the DeepSort algorithm

A customizable, stackable, and lightweight modal component for Vue.

Sync paired-end FASTA/Q files and keep singleton reads

A high-performance observability data pipeline.

De novo annotation of young retrotransposons

Extensible stream pipelines with object algebras.

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Learning the Variant Call Format

A nice vertical drag layout, a bit like BottomSheet, but with strong customization!

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A workshop on Unix Programming Principles using tools such as grep, sed, awk, shell programming and regular expressions

Efficient ML solution for long-tailed demands.

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modular pluggable media sorter

A simple Jenkins plugin to promote artifacts.

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Pack a Go workflow/function as a Unix-style pipeline command