166 Open source projects that are alternatives of or similar to prime-re.github.io

Multi-modal Image Registration And Connectivity anaLysis

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Advanced Normalization Tools in R

A lightweight python module to interact with atlases for systems neuroscience

Automated 3D brain registration with support for multiple species and atlases.

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

A virtual optogenetics laboratory

Graph theory analysis of brain MRI data

List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data

Classification of Breast Cancer diagnosis Using Support Vector Machines

NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Utility functions for working with DICOM and BIDS neuroimaging data

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

Handles OAuth and stores slack token

A R framework for pipeline benchmarking, with application to single-cell RNAseq

A process management system written in python

Specialized tools for MRI

A suite of tools for medical image processing focused on brain analysis

Web application framework for XSLT and XQuery developers

Python package for Customizable Data Preprocessing Pipelines

Backend for ChRIS

An End to End Customer Churn Prediction solution using AWS services.

Notebook of the Crash Course of Pandas 2018

Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation

TorchX is a universal job launcher for PyTorch applications. TorchX is designed to have fast iteration time for training/research and support for E2E production ML pipelines when you're ready.

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Preprocessing and reconstruction of diffusion MRI

A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.

Neural networks to segment some type of biomedical images

Azure AKS Kubernetes Masterclass

A graphical user interface for distributed data processing of high throughput genomics

A medical image converter

MIRT: Michigan Image Reconstruction Toolbox (Julia version)

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Machine Learning eXchange (MLX). Data and AI Assets Catalog and Execution Engine

Project template for developing shared Jenkins pipeline libraries.

Vent is a light-weight platform built to automate network collection and analysis pipelines using a flexible set of popular open source tools and technologies. Vent is python-based, extensible, leverages docker containers, and provides both an API and CLI.

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Android SDK for the NeuroSky MindWave Mobile Brainwave Sensing Headset

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

NEURON User Interface

Pydra Dataflow Engine

Awesome Magnetic Resonance Imaging (MRI)

A Parametric Framework to Generate Visual Illusions using Python

An AI-powered open-source medical image analysis toolbox

Intro to DevOps from scratch.

jemal gem – Ruby interface to jemalloc

R Interface to MLeap

Images used internally for running continuous integration/delivery tasks

A lightweight I/O utility for the BrainVision data format, written in Python.

Generate your resume easily from Github actions ✅ using discussion section 📃 🚀

Software platform for clinical neuroimaging studies

Brain Segmentation on MRBrains18

Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system

BIDScoin converts your source-level neuroimaging data to BIDS

Smart India Hackathon 2019 project given by the Department of Atomic Energy