GOMCGOMC - GPU Optimized Monte Carlo is a parallel molecular simulation code designed for high-performance simulation of large systems
Stars: ✭ 41 (-2.38%)
Neural-Scam-ArtistWeb Scraping, Document Deduplication & GPT-2 Fine-tuning with a newly created scam dataset.
Stars: ✭ 18 (-57.14%)
NPB-CPPNAS Parallel Benchmark Kernels in C/C++. The parallel versions are in FastFlow, TBB, and OpenMP.
Stars: ✭ 18 (-57.14%)
awesome-nanoporeA curated list of awesome nanopore analysis tools.
Stars: ✭ 100 (+138.1%)
protwisProtwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
Stars: ✭ 20 (-52.38%)
developkit set2021年最新总结,值得推荐的c/c++开源框架与库。持续更新中。
Stars: ✭ 654 (+1457.14%)
freqgen🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Stars: ✭ 16 (-61.9%)
dumbmutateSimple mutation-testing
Stars: ✭ 32 (-23.81%)
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-59.52%)
Foundations of HPC 2021This repository collects the materials from the course "Foundations of HPC", 2021, at the Data Science and Scientific Computing Department, University of Trieste
Stars: ✭ 22 (-47.62%)
vbz compressionVBZ compression plugin for nanopore signal data
Stars: ✭ 31 (-26.19%)
Guided Missile SimulationGuided Missile, Radar and Infrared EOS Simulation Framework written in Fortran.
Stars: ✭ 33 (-21.43%)
GRAFIMOGRAph-based Finding of Individual Motif Occurrences
Stars: ✭ 22 (-47.62%)
SnifflesStructural variation caller using third generation sequencing
Stars: ✭ 248 (+490.48%)
libquoDynamic execution environments for coupled, thread-heterogeneous MPI+X applications
Stars: ✭ 21 (-50%)
Dash.jlDash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
Stars: ✭ 248 (+490.48%)
Scaff10XPipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Stars: ✭ 21 (-50%)
CanvasxpressJavaScript VisualizationTools
Stars: ✭ 247 (+488.1%)
pychopperA tool to identify, orient, trim and rescue full length cDNA reads
Stars: ✭ 74 (+76.19%)
sample-sheetA permissively licensed library designed to replace Illumina's Experiment Manager
Stars: ✭ 42 (+0%)
StrelkaStrelka2 germline and somatic small variant caller
Stars: ✭ 244 (+480.95%)
RoaryRapid large-scale prokaryote pan genome analysis
Stars: ✭ 176 (+319.05%)
SourmashQuickly search, compare, and analyze genomic and metagenomic data sets.
Stars: ✭ 237 (+464.29%)
faster lmm dA faster lmm for GWAS. Supports GPU backend.
Stars: ✭ 12 (-71.43%)
stringMLSTFast k-mer based tool for multi locus sequence typing (MLST)
Stars: ✭ 33 (-21.43%)
DashAnalytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.
Stars: ✭ 15,592 (+37023.81%)
yaskYASK--Yet Another Stencil Kit: a domain-specific language and framework to create high-performance stencil code for implementing finite-difference methods and similar applications.
Stars: ✭ 81 (+92.86%)
HyperMinHash-javaUnion, intersection, and set cardinality in loglog space
Stars: ✭ 48 (+14.29%)
shyft⬡ Shyft is a server-side framework for building powerful GraphQL APIs 🚀
Stars: ✭ 56 (+33.33%)
React CytoscapejsReact component for Cytoscape.js network visualisations
Stars: ✭ 217 (+416.67%)
jgi-queryA simple command-line tool to download data from Joint Genome Institute databases
Stars: ✭ 38 (-9.52%)
pipeline-pinfish-analysisPipeline for annotating genomes using long read transcriptomics data with pinfish
Stars: ✭ 27 (-35.71%)
MinigraphProof-of-concept seq-to-graph mapper and graph generator
Stars: ✭ 206 (+390.48%)
TeamTeriGenomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (-28.57%)
SequenceserverIntuitive local web frontend for the BLAST bioinformatics tool
Stars: ✭ 198 (+371.43%)
taeperA small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
Stars: ✭ 18 (-57.14%)
Dgl LifesciPython package for graph neural networks in chemistry and biology
Stars: ✭ 194 (+361.9%)
interARTICInterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
Stars: ✭ 22 (-47.62%)
Raxml NgRAxML Next Generation: faster, easier-to-use and more flexible
Stars: ✭ 191 (+354.76%)
poreCovSARS-CoV-2 workflow for nanopore sequence data
Stars: ✭ 34 (-19.05%)
KaryoploterkaryoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Stars: ✭ 192 (+357.14%)
RibbonA genome browser that shows long reads and complex variants better
Stars: ✭ 184 (+338.1%)
claw-compilerCLAW Compiler for Performance Portability
Stars: ✭ 38 (-9.52%)
Janggu Deep learning infrastructure for bioinformatics
Stars: ✭ 174 (+314.29%)
Sampled-MinHashingA method to mine beyond-pairwise relationships using Min-Hashing for large-scale pattern discovery
Stars: ✭ 24 (-42.86%)
SurvivorToolset for SV simulation, comparison and filtering
Stars: ✭ 180 (+328.57%)
haslrA fast tool for hybrid genome assembly of long and short reads
Stars: ✭ 68 (+61.9%)
WgsimReads simulator
Stars: ✭ 178 (+323.81%)
unimapA EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✭ 76 (+80.95%)
cpu-gbfilter♨️ Optimized Gaussian blur filter on CPU.
Stars: ✭ 14 (-66.67%)
siriusSIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Stars: ✭ 32 (-23.81%)
CeleScopeSingle Cell Analysis Pipelines
Stars: ✭ 36 (-14.29%)
dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
Stars: ✭ 47 (+11.9%)
PrimerMinerR mased batch sequence downloader, with primer development and in silico evaluation capabilities
Stars: ✭ 27 (-35.71%)