413 Open source projects that are alternatives of or similar to RNArtistCore

RNArtist allows you to design and paint your RNA 2D structures interactively. Coupled with the 3D viewer UCSF Chimera, use your 2D as a map to explore RNA 3D architectures.

A platform to do RNA science

Website for the Eterna citizen science game

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.

minimalistic nucleic acid folding

The BridgeDb Library source code

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

Core BioPerl 1.x code

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Quickly search, compare, and analyze genomic and metagenomic data sets.

RNA-seq analysis pipeline for detection gene-fusions

dysgu-SV is a collection of tools for calling structural variants using short or long reads

🔬📚 Galaxy Tool wrappers

An R package for reproducible and automated ADMIXTOOLS analyses

Find target sites for the miRNAs in genomic sequences

GNparser normalises scientific names and extracts their semantic elements.

Structural variation caller using third generation sequencing

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

JavaScript VisualizationTools

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

Strelka2 germline and somatic small variant caller

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Examples of using deep learning in Bioinformatics

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

A simple command-line tool to download data from Joint Genome Institute databases

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Improving genome bins through the combination of different binning programs

Eterna game/RNA design interface

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

RNAcentral website source code

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

A permissively licensed library designed to replace Illumina's Experiment Manager

📊 Codon usage tables in code-friendly format + Python bindings

An ultrafast memory-efficient short read aligner

waka waka

Genomics using open source tools, running on GCP or AWS

Haplotype VCF comparison tools

Open source Java library for computational proteomics

A curated list of Cheminformatics libraries and software.

Precision HLA typing from next-generation sequencing data

Official git repository for Biopython (originally converted from CVS)

Classify sequencing reads using MinHash.

cython + htslib == fast VCF and BCF processing

Toolkit for preparing genomes for submission to NCBI

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Computational Analysis of Novel Drug Opportunities

Remote protein homology detection suite.

Single Cell Analysis Pipelines

The Ensembl Compara Perl API and SQL schema

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Streamlining SLAM-seq analysis with ultra-high sensitivity

GRAph-based Finding of Individual Motif Occurrences

A faster lmm for GWAS. Supports GPU backend.