147 Open source projects that are alternatives of or similar to Scripts

An interactive image processing program for biologists written in Python.

ImageJ macros and scripts written at the imaging facility MRI

KNIME Image Processing Extension

Lattice light-sheet post-processing utility.

Automated 3D cell detection and registration of whole-brain images

No description or website provided.

Collection of mathematical morphology methods and plugins for ImageJ

Plugins for bone image analysis

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

Python samples for Micro-Manager: image acquisition and microscope control system

Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.

Open Delmic Microscope Software

native Python dataclasses for the OME data model

Python wrapper for Siddhi engine

🎇 Quickly search over billions of images

⤴️ Steep Workflow Management System – Run scientific workflows in the Cloud

Collection of useful scripts for Linux (git, docker, LUKS, Archlinux...)

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

This repository explores the variety of techniques commonly used to analyze and interpret images. It also describes challenging real-world applications where vision is being successfully used, both for specialized applications such as medical imaging, and for fun, consumer-level tasks such as image editing and stitching, which students can apply…

Gaussian processes and Bayesian optimization for images and hyperspectral data

Multiple file format reading directly into napari using pure Python

sciview is a tool for visualization and interaction with ND image and mesh data

Library that helps to implement the QuadTree in android, by using splitting images

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

Burp Extension that copies a request and builds a FFUF skeleton

No description or website provided.

Cython bindings for fpzip, a floating point image compression algorithm.

pytask is a workflow management system which facilitates reproducible data analyses.

I/O operations for OME-TIFF files in Julia

Tiny Image in Javascript - Edge Detection Algorithms

Official Python implementation of the 'Sparse deconvolution'-v0.3.0

Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

A list of free and open forensics analysis tools and other resources

WRENCH: Cyberinfrastructure Simulation Workbench

Functional AppleScripts operating out of Keyboard Maestro, Alfred and Automator to optimise productivity.

A collection of tools for painting super-resolution images

Find the type or size of an image

Cookbook examples for the Insight Toolkit documented with Sphinx

Automated 3D brain registration with support for multiple species and atlases.

PiGallery: AI-powered Self-hosted Secure Multi-user Image Gallery and Detailed Image analysis using Machine Learning, EXIF Parsing and Geo Tagging

ggimg: Graphics Layers for Plotting Image Data with ggplot2

Speed up coding/extending image analysis in Python.

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

👁️ An authorial set of fundamental Python recipes on Computer Vision and Digital Image Processing.

3D Slicer Module for connecting to model repository and use models for image analysis.

MAINTAINER WANTED -- Decode embedded EXIF meta data from image files written in Pure Golang

An R package for conducting co-localization analysis. Edit

GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.

Collection of scripts for bacterial genomics

Configurable scripts menu with search field in Qt

Interactive Image similarity and Visual Search and Retrieval application

A curated list of awesome cytodata resources

(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018

A faster re-implementation of the FAST-9 algorithm (C++, with C bindings available)

A python library for advanced lattice light-sheet image analysis

Axon/Myelin segmentation using Deep Learning

GUI for Image processing with Matlab

Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.