418 Open source projects that are alternatives of or similar to searchgui

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

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A computational library for learning and evaluating biological knowledge graph embeddings

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CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

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Project metadata manager for PEPs in Python

Useful bioinformatic scripts

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Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

micca - MICrobial Community Analysis

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Mapping-Assisted Targeted-Assembly for Metagenomics

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

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An NGS read trimming tool that is specific, sensitive, and speedy. (production)

exploratory and interactive microbiome analyses based on heatmaps

Read and write FASTQ and FASTA efficiently from Python

No description or website provided.

Fast hash function for DNA sequences

Compare different differential abundance and expression methods

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

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Simple pure Python SAM parser and objects for working with SAM records

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Curated list of bioinformatics formats and publications

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netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

A curated list of awesome bioinformatics software.

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

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Read DNA sequences from colourful Microsoft Word documents

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

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The Microbiome Interpretable Temporal Rule Engine