729 Open source projects that are alternatives of or similar to sirius

pyQms, generalized, fast and accurate mass spectrometry data quantification

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

A package for designing compact and comprehensive capture probe sets.

chemical graph theory library for JavaScript

Public Workflows at GNPS

An analysis and visualization platform for 'omics data

The Chemistry Development Kit

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

🌈Scaffold genome sequence assemblies using linked read sequencing data

A repository for setting up a RNAseq workflow

Quantitative features for mass spectrometry data

Plant image analysis using OpenCV

Official code repository for GATK versions 4 and up

Curated (meta)list of resources for Biology.

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

A curated list of resources for machine learning for small-molecule drug discovery

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

A curated list of Cheminformatics libraries and software.

Python package for graph neural networks in chemistry and biology

Data intensive science for everyone.

Data and analysis for the Splatter paper

NGLess: NGS with less work

A collection of scripts and notes related to genomics and bioinformatics

Molecular dynamics simulation software

A complete toolkit for shotgun proteomics data analysis

Cheminformatics formulae for the Homebrew package manager

Signal-level algorithms for MinION data

Implementation of the paper - Automatic chemical design using a data-driven continuous representation of molecules

Java utilities for Bioinformatics

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

UGENE is free open-source cross-platform bioinformatics software

LC-MS data processing tool for large-scale metabolomics experiments.

Robust, flexible and resource-efficient pipelines using Go and the commandline

CoreMS is a comprehensive mass spectrometry software framework

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

🔬 Assemble large genomes using short reads

This library tackles the construction and efficient execution of computational chemistry workflows

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Web Interface for ChEMBL @ EMBL-EBI

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

A Docker multi-container application that runs a BOINC server

Toolkit for preparing genomes for submission to NCBI

Webscraping data about editors of scientific journals.

The BridgeDb Library source code

The Blue Brain BioExplorer (BBBE) is a tool for scientists to extract and analyze scientific data from visualization and interactive exploration

Publication delays at PLOS and 3,475 other journals

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

No description or website provided.

Python package for automated analysis and management of gridded climate data

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

A permissively licensed library designed to replace Illumina's Experiment Manager

Computational Analysis of Novel Drug Opportunities

The Catalogue of Life

Laboratory automation for the behavioral and social sciences; human culture on a chip.

Python interface to the ProSAIL leaf/canopy reflectance model

Haskell library containing isotopic masses and relative abundances for elements from Hydrogen to Bismuth and Thorium and Uranium (excluding Technetium and promethium), i.e., all elements with naturally-occurring isotopes.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

GNparser normalises scientific names and extracts their semantic elements.