All Projects → tftargets → Similar Projects or Alternatives

795 Open source projects that are alternatives of or similar to tftargets

Sniffles
Structural variation caller using third generation sequencing
Stars: ✭ 248 (+222.08%)
Mutual labels:  bioinformatics
sc2-illumina-pipeline
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
Stars: ✭ 18 (-76.62%)
Mutual labels:  bioinformatics
Dash.jl
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
Stars: ✭ 248 (+222.08%)
Mutual labels:  bioinformatics
NeuroSEED
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
Stars: ✭ 40 (-48.05%)
Mutual labels:  bioinformatics
Canvasxpress
JavaScript VisualizationTools
Stars: ✭ 247 (+220.78%)
Mutual labels:  bioinformatics
heddlr
Bring a functional programming mindset to R Markdown document generation
Stars: ✭ 14 (-81.82%)
Mutual labels:  rstats
Bioperl Live
Core BioPerl 1.x code
Stars: ✭ 244 (+216.88%)
Mutual labels:  bioinformatics
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
Stars: ✭ 24 (-68.83%)
Mutual labels:  bioinformatics
Strelka
Strelka2 germline and somatic small variant caller
Stars: ✭ 244 (+216.88%)
Mutual labels:  bioinformatics
r-docker-tutorial
A docker tutorial for reproducible research
Stars: ✭ 245 (+218.18%)
Mutual labels:  rstats
Sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
Stars: ✭ 237 (+207.79%)
Mutual labels:  bioinformatics
Binning refiner
Improving genome bins through the combination of different binning programs
Stars: ✭ 26 (-66.23%)
Mutual labels:  bioinformatics
Deep learning examples
Examples of using deep learning in Bioinformatics
Stars: ✭ 234 (+203.9%)
Mutual labels:  bioinformatics
atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
Stars: ✭ 109 (+41.56%)
Mutual labels:  bioinformatics
codon-usage-tables
📊 Codon usage tables in code-friendly format + Python bindings
Stars: ✭ 21 (-72.73%)
Mutual labels:  bioinformatics
Abyss
🔬 Assemble large genomes using short reads
Stars: ✭ 219 (+184.42%)
Mutual labels:  bioinformatics
cranlogs
Download Logs from the RStudio CRAN Mirror
Stars: ✭ 70 (-9.09%)
Mutual labels:  rstats
React Cytoscapejs
React component for Cytoscape.js network visualisations
Stars: ✭ 217 (+181.82%)
Mutual labels:  bioinformatics
rkmh
Classify sequencing reads using MinHash.
Stars: ✭ 42 (-45.45%)
Mutual labels:  bioinformatics
Awosome Bioinformatics
A curated list of resources for learning bioinformatics.
Stars: ✭ 214 (+177.92%)
Mutual labels:  bioinformatics
dnaio
Read and write FASTQ and FASTA efficiently from Python
Stars: ✭ 27 (-64.94%)
Mutual labels:  bioinformatics
Minigraph
Proof-of-concept seq-to-graph mapper and graph generator
Stars: ✭ 206 (+167.53%)
Mutual labels:  bioinformatics
CeleScope
Single Cell Analysis Pipelines
Stars: ✭ 36 (-53.25%)
Mutual labels:  bioinformatics
Sequenceserver
Intuitive local web frontend for the BLAST bioinformatics tool
Stars: ✭ 198 (+157.14%)
Mutual labels:  bioinformatics
RNArtistCore
A Kotlin DSL and library to create and plot RNA 2D structures
Stars: ✭ 20 (-74.03%)
Mutual labels:  bioinformatics
Dgl Lifesci
Python package for graph neural networks in chemistry and biology
Stars: ✭ 194 (+151.95%)
Mutual labels:  bioinformatics
awesome-phages
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Stars: ✭ 14 (-81.82%)
Mutual labels:  bioinformatics
Raxml Ng
RAxML Next Generation: faster, easier-to-use and more flexible
Stars: ✭ 191 (+148.05%)
Mutual labels:  bioinformatics
destatiscleanr
Imports and cleans data from official German statistical offices to jump-start the data analysis
Stars: ✭ 47 (-38.96%)
Mutual labels:  rstats
Soapdenovo2
Next generation sequencing reads de novo assembler.
Stars: ✭ 150 (+94.81%)
Mutual labels:  bioinformatics
protwis
Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
Stars: ✭ 20 (-74.03%)
Mutual labels:  bioinformatics
Ribbon
A genome browser that shows long reads and complex variants better
Stars: ✭ 184 (+138.96%)
Mutual labels:  bioinformatics
shapr
Explaining the output of machine learning models with more accurately estimated Shapley values
Stars: ✭ 95 (+23.38%)
Mutual labels:  rstats
Janggu
Deep learning infrastructure for bioinformatics
Stars: ✭ 174 (+125.97%)
Mutual labels:  bioinformatics
sample-sheet
A permissively licensed library designed to replace Illumina's Experiment Manager
Stars: ✭ 42 (-45.45%)
Mutual labels:  bioinformatics
Survivor
Toolset for SV simulation, comparison and filtering
Stars: ✭ 180 (+133.77%)
Mutual labels:  bioinformatics
music
Music Theory in R
Stars: ✭ 34 (-55.84%)
Mutual labels:  rstats
Wgsim
Reads simulator
Stars: ✭ 178 (+131.17%)
Mutual labels:  bioinformatics
TeamTeri
Genomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (-61.04%)
Mutual labels:  bioinformatics
Roary
Rapid large-scale prokaryote pan genome analysis
Stars: ✭ 176 (+128.57%)
Mutual labels:  bioinformatics
mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
Stars: ✭ 34 (-55.84%)
Mutual labels:  rstats
Goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Stars: ✭ 175 (+127.27%)
Mutual labels:  bioinformatics
PrimerMiner
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Stars: ✭ 27 (-64.94%)
Mutual labels:  bioinformatics
Anndata
Annotated data.
Stars: ✭ 171 (+122.08%)
Mutual labels:  bioinformatics
flowmapblue.R
Flowmap.blue widget for R
Stars: ✭ 42 (-45.45%)
Mutual labels:  rstats
Afterqc
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stars: ✭ 169 (+119.48%)
Mutual labels:  bioinformatics
PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-77.92%)
Mutual labels:  bioinformatics
Biosyntax
Syntax highlighting for computational biology
Stars: ✭ 164 (+112.99%)
Mutual labels:  bioinformatics
pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Stars: ✭ 53 (-31.17%)
Mutual labels:  bioinformatics
jgi-query
A simple command-line tool to download data from Joint Genome Institute databases
Stars: ✭ 38 (-50.65%)
Mutual labels:  bioinformatics
Snpr
The sources of the openSNP website
Stars: ✭ 155 (+101.3%)
Mutual labels:  bioinformatics
Scaff10X
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Stars: ✭ 21 (-72.73%)
Mutual labels:  bioinformatics
Clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Stars: ✭ 151 (+96.1%)
Mutual labels:  bioinformatics
biolink-api
API for linked biological knowledge
Stars: ✭ 54 (-29.87%)
Mutual labels:  bioinformatics
rtfbs db
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
Stars: ✭ 23 (-70.13%)
Mutual labels:  transcription-factors
faster lmm d
A faster lmm for GWAS. Supports GPU backend.
Stars: ✭ 12 (-84.42%)
Mutual labels:  bioinformatics
2017 2018-single-cell-RNA-sequencing-Workshop-UCD UCB UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
Stars: ✭ 31 (-59.74%)
Mutual labels:  bioinformatics
nPhase
Ploidy agnostic phasing pipeline and algorithm
Stars: ✭ 18 (-76.62%)
Mutual labels:  bioinformatics
agent
Store sensitive data such as API tokens
Stars: ✭ 19 (-75.32%)
Mutual labels:  rstats
sacred
📖 Sacred texts in R
Stars: ✭ 19 (-75.32%)
Mutual labels:  rstats
61-120 of 795 similar projects