All Git Users → sigven

7 open source projects by sigven

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Personal Cancer Genome Reporter (PCGR)

✭ 168

r interpreter vcf cancer-genomics

Generic germline variant annotation pipeline

✭ 23

python docker workflow vcf

Genomic VCF to tab-separated values

✭ 27

python tsv conversion vcf vcf-data variant-annotations variant-filtration genotype-data tab-separated

Cancer Predisposition Sequencing Reporter (CPSR)

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

✭ 21

r python Dockerfile shell quality-control cancer coverage-report sequencing next-generation-sequencing cancer-genomics alignment quality-assurance command-line-tool bam clinical-decision-support pathogenic-variants sequencing-coverage pathogenic-loci

7. oncoPharmaDB

Targeted and non-targeted anticancer drugs and drug regimens

✭ 22

r TeX python pharmacology drug cancer-data drug-targets oncology-data drug-target-interactions

1-7 of 7 user projects