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Top 5 single-cell-omics open source projects

SPLiT-Seq demultiplexing

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

✭ 20

python shell scrna-seq single-cell fastq demultiplexing single-cell-rna-seq single-cell-analysis single-cell-omics scrna-seq-analysis single-cell-sequencing split-seq

MAGMA Celltyping

Find causal cell-types underlying complex trait genetics

✭ 41

r Dockerfile gwas genomics magma single-cell-omics

single-cell-papers-with-code

Papers with code for single cell related papers

✭ 20

reproducible-research reproducible-science scrna-seq single-cell single-cell-atac-seq single-cell-omics scrna-seq-analysis paper-with-code

A comprehensive dimensional reduction framework to recover the latent topology from high-dimensional data.

✭ 64

python visualization data-science machine-learning clustering graphs scikit-learn data-visualization information-visualization dimensionality-reduction topology-visualiztion dimension-reduction topological-data-analysis knowledge-representation topology-optimization single-cell-genomics single-cell-analysis single-cell-omics data-topology

Simulating single-cell data using gene regulatory networks 📠

✭ 59

r Dockerfile benchmarking single-cell single-cell-analysis single-cell-omics

1-5 of 5 single-cell-omics projects