Top 9 scrna-seq-analysis open source projects

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Papers with code for single cell related papers

Quantifying experimental perturbations at single cell resolution

Data-driven Network-based Bayesian Inference of Drivers

Clustering scRNAseq by genotypes

Harmony framework for connecting scRNA-seq data from discrete time points

R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

Single cell type annotation guided by cell atlases, with freedom to be queer

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches