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Top 6 structural-bioinformatics open source projects

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

pdb-benchmarks

Benchmarking common tasks on proteins in various languages and packages

✭ 33

python shell C++julia java r bioinformatics pdb comparison benchmarks mmcif structural-bioinformatics mmtf pdb-files

lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Bio3DView.jl

A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto

✭ 30

julia bioinformatics structural-biology protein-structure jupyter-notebook pluto ijulia structural-bioinformatics

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

✭ 240

python TeX bioinformatics structural-biology pdb protein structural-bioinformatics utrecht-university rcsb

haddocking.github.io

Webpage of the Bonvinlab @ Utrecht University and HADDOCK software

✭ 14

HTML Jupyter Notebook education research structural-biology modeling software protein-protein-interaction structural-bioinformatics integrative-modeling utrecht-university

1-6 of 6 structural-bioinformatics projects