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Top 11 structural-biology open source projects

VSCoding-Sequence

VSCode Extension for interactively visualising protein structure data in the editor

✭ 41

typescript structural-biology pdb protein-structure structure vscode molecule protein vscode-extension pdb-files molstar

Rosetta FunFolDes – a general framework for the computational design of functional proteins.

✭ 15

scala shell structural-biology protein-structure publication-data rosetta protein-design protein-protein-interaction functional-protein-design

protein-transformer

Predicting protein structure through sequence modeling

✭ 77

Jupyter Notebook machine-learning structural-biology protein-structure computational-biology attention sequence-to-sequence

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

The Biochemical Algorithms Library

✭ 64

C++c CMake HTML Yacc python structural-biology computational-biology force-field chemoinformatics drug-design

freesasa-python

FreeSASA Python Module

✭ 26

cython python powershell Batchfile c structural-biology pypi-packages

Computational-CryoEM

A curated list of awesome computational cryo-EM methods.

✭ 33

Jupyter Notebook python structural-biology computational-biology electron-microscopy cryo-em single-particle-analisys

A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto

✭ 30

julia bioinformatics structural-biology protein-structure jupyter-notebook pluto ijulia structural-bioinformatics

An all-atom protein structure dataset for machine learning.

✭ 227

python shell machine-learning deep-learning structural-biology protein-structure dataset

A dependency-free cross-platform swiss army knife for PDB files.

✭ 240

python TeX bioinformatics structural-biology pdb protein structural-bioinformatics utrecht-university rcsb

haddocking.github.io

Webpage of the Bonvinlab @ Utrecht University and HADDOCK software

✭ 14

HTML Jupyter Notebook education research structural-biology modeling software protein-protein-interaction structural-bioinformatics integrative-modeling utrecht-university

1-11 of 11 structural-biology projects