95 Open source projects that are alternatives of or similar to BioAlignments.jl

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

No description or website provided.

Binomica Public Repository for Biological Parts

A fast multiple sequence alignment program.

DOM Text Based Multiple Sequence Alignment Library

A taxonomic toolbelt for R

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

Ten Quick Tips for Deep Learning in Biology

Build, share, and embed visualizations of metabolic pathways.

View biological networks via Cytoscape.js and sbgn-ml

Collection of commonly used RDP Tools for easy building

Biological sequences for the julia language

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Blender plugin to process biological data and molecular work.

A powerful open source data warehouse system

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Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs…

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Utilities for analyzing next generation sequencing data.

Global Biotic Interactions provides access to existing species interaction datasets

Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm

A list of web-based interactive biological data visualizations.

Datastructures and algorithms for working with genetic variation

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

The main repository for the development of the evolution game Thrive.

The consensus GEM for Saccharomyces cerevisiae

Multi-sample somatic variant caller

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences

Software for writing protocols and running them on the Opentrons OT-2

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

An interactive heatmap visualization built using D3.js

A web application to visualize and edit pathway models

Curated (meta)list of resources for Biology.

use the noise

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

Tools and software library developed by the ONT Applications group

A Python Library for Conway's Game of Life

RNAcentral website source code

Race and ethnicity Imputation from Disease history with Deep LEarning

Predict AMPs in (meta)genomes and peptides

Project Home repo for Central Dockerfile and Project-wide issues

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

Python Programming for Biologists

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Brainfarts are caused by the rupturing of the cerebral sphincter.

Data collection, equipment control, and imaging engine for environmental IoT applications. Runs on RPi/ARM and interfaces with Arduino/ATmega minions over serial.

The Modular Aligner and The Modular SV Caller

BISulfite-seq CUI Toolkit

📈R package for analyzing biological growth

Scripts to download genomes from the NCBI FTP servers

3d engine implementation in DNA code!

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Splice junction analysis and filtering from BAM files

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

🔬A library of JavaScript components to represent biological data

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

Research on polio / protein folding.