287 Open source projects that are alternatives of or similar to brainreg

A lightweight python module to interact with atlases for systems neuroscience

Automated 3D cell detection and registration of whole-brain images

Multi-modal Image Registration And Connectivity anaLysis

A suite of tools for medical image processing focused on brain analysis

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

The MATLAB toolbox for MEG, EEG and iEEG analysis

NEURON User Interface

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

Visualizer for large-scale and interactive ray-tracing of neurons

Segmentation of 3D shapes in a common anatomical space

Advanced Normalization Tools in R

Python 3 library for analysis of neuroanatomical data

A virtual optogenetics laboratory

Open resource exchange platform for non-human primate neuroimaging

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

medical image visualization library and development toolkit

A curated list of awesome neuroscience libraries, software and any content related to the domain.

A publicly-editable collection of open computational neuroscience resources

A multi-purpose GPU-accelerated open-source suite for brain data visualization

Automated mouse atlas propagation

A Parametric Framework to Generate Visual Illusions using Python

Ruby on Rails App. A good example of how to build social networking system with live chat support, blogging,groups etc.

Recordings of 10k neurons during spontaneous behaviors

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Laravel app boilerplate with email verification process on registration

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

Discover, install, and share napari plugins

Fast and Accurate 3D PSF Computation for Fluorescence Microscopy

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

Django app for frictionless signup

An Awesome List of Cognitive Science Resources

A block modeling system for cognitive neuroscience

Deep learning integration for Nengo

The PyTorch Implementation of Variable Optimizers/ Neural Variable Risk Minimization proposed in our Neural Computation paper: Artificial Neural Variability for Deep Learning: On overfitting, Noise Memorization, and Catastrophic Forgetting.

The Arbor multi-compartment neural network simulation library.

[ICRA 2020] Robust, Occlusion-aware Pose Estimation for Objects Grasped by Adaptive Hands

A lightweight I/O utility for the BrainVision data format, written in Python.

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Project Page of Combining 3D Morphable Models: A Large scale Face-and-Head Model - [CVPR 2019]

Single-cell fluorescence microscopy data analysis

🕝 Time-warped principal components analysis (twPCA)

A Python-based module for creating flexible and robust spike sorting pipelines.

✏️ Hackathon registration server

Motion Averaging

Registration and authorization (including social) for aiohttp apps.

Elephant is the Electrophysiology Analysis Toolkit

认知计算神经联盟 讨论会

A convex 3D deconvolution algorithm for low photon count fluorescence imaging

Non-rigid iterative closest point, nricp.

A toolbox for integrated information theory.

Neuroscience information exchange format

No description or website provided.

Brain Imaging Analysis Kit

A list of schools and researchers in computational neuroscience

code for storing neurodata images and image annotations

Mother of All BCI Benchmarks