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PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
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tracyBasecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
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civic-serverBackend Server for CIViC Project
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civic-clientWeb client for CIViC: Clinical Interpretations of Variants in Cancer
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gubbinsRapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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plasmidtronAssembling the cause of phenotypes and genotypes from NGS data
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assembly improvementImprove the quality of a denovo assembly by scaffolding and gap filling
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snp-sitesFinds SNP sites from a multi-FASTA alignment file
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pblatparallelized blat with multi-threads support
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indigoIndigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
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MRQyMRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
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mrivismedical image visualization library and development toolkit
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pheniqsFast and accurate sequence demultiplexing
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ggQCggQC
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missioncontrolReal-time monitoring of Firefox release health
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mzQCReporting and exchange format for mass spectrometry quality control data
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MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
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mpvQClibmpv based application for quality control of videos
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PTXQCA Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
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aibolitStatic Analyzer for Java Code with Machine Learning in Mind
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rvtestsRare variant test software for next generation sequencing data
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smartas📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
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shiny-iatlasAn interactive web portal for exploring immuno-oncology data
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hotspot3d3D hotspot mutation proximity analysis tool
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civicmineText mining cancer biomarkers for the CIVIC database
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HLAxHLA: Fast and accurate HLA typing from short read sequence data
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GeneFuseGene fusion detection and visualization
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