441 Open source projects that are alternatives of or similar to conda-env-builder

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Version 5 of the CAFE phylogenetics software

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Feature extraction algorithm for genomic data

Method to optimally select samples for validation and resequencing

Computational Analysis of Novel Drug Opportunities

🎯 Human transcription factor target genes.

Per-base per-nucleotide depth analysis

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

PyTorch wheels (whl) & conda for aarch64 / ARMv8 / ARM64

Genomics data visualization in Python by using matplotlib.

A fast 23andMe genome text file parser, now superseded by arv

The Ensembl Compara Perl API and SQL schema

Fast hash function for DNA sequences

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Guidelines for using IvLabs PC. General instructions for maintaining and using any PC/laptop while using Ubuntu for Robotics/DL/RL research.

Simple pure Python SAM parser and objects for working with SAM records

Sentieon DNAseq

Docker images for fastai

A VSCode extension to generate development environments using micromamba and conda-forge package repository

A Kotlin DSL and library to create and plot RNA 2D structures

Examples using Clustergrammer2 to explore high-dimensional datasets.

Open source Java library for computational proteomics

Stacked Denoising AutoEncoder based on TensorFlow

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

GWAS summary statistics files QC tool

Streamlining SLAM-seq analysis with ultra-high sensitivity

Earl Grey: A fully automated TE curation and annotation pipeline

An R package for reproducible and automated ADMIXTOOLS analyses

Rapid determination of appropriate reference genomes.

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

exploratory and interactive microbiome analyses based on heatmaps

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Single Cell Analysis Pipelines

VirNet: A deep attention model for viral reads identification

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

3D printed sculpture of a DNA molecule, showing my own genome

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

A permissively licensed library designed to replace Illumina's Experiment Manager

A simple command-line tool to download data from Joint Genome Institute databases

Genomics using open source tools, running on GCP or AWS

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

A Python platform for Structural Bioinformatics

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

A curated list of awesome bioinformatics software.

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Mulled - Automatized Containerized Software Repository

A faster lmm for GWAS. Supports GPU backend.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Genotyping of segregating mobile elements insertions

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Compute N50/NG50 and auN/auNG

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

No description or website provided.

Project metadata manager for PEPs in Python