465 Open source projects that are alternatives of or similar to docker-builds

Bioinformatics containers

Project metadata manager for PEPs in Python

Dockerfile & kubernetes Yaml Templates

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

No description or website provided.

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

BACNET is a Java based platform to develop website for multi-omics analysis

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Genomics data visualization in Python by using matplotlib.

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

micca - MICrobial Community Analysis

exploratory and interactive microbiome analyses based on heatmaps

📊 Identify cell types and pathways affected by genetic risk loci.

A curated list of awesome bioinformatics software.

MMseqs2 app to run on your workstation or servers

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Per-base per-nucleotide depth analysis

No description or website provided.

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Assembling the cause of phenotypes and genotypes from NGS data

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Build and maintain multiple custom conda environments all in once place.

Introduction to the Unix Shell for biologists

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Mapping-Assisted Targeted-Assembly for Metagenomics

Earl Grey: A fully automated TE curation and annotation pipeline

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Optimized media, analytics and graphics software stack images. Use the dockerfile(s) in your project or as a recipe book for bare metal installation.

A library to build and execute typed scientific workflows

A fast 23andMe genome text file parser, now superseded by arv

Fast motif matching in R

De novo assembly based variant calling pipeline for Illumina short reads

React rerelease of MSAViewer

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Genotyping of segregating mobile elements insertions

DOM Text Based Multiple Sequence Alignment Library

Dockerfiles for Common Lisp programming

Predict plasmids from uncorrected long read data

Read DNA sequences from colourful Microsoft Word documents

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Fast alignment and preprocessing of chromatin profiles

Examples using Clustergrammer2 to explore high-dimensional datasets.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Phylogenetic trees in Julia

A computational library for learning and evaluating biological knowledge graph embeddings

VirNet: A deep attention model for viral reads identification

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Provide R access to the NCI Genomic Data Commons portal.

Scripts to build and use docker images including GHDL

The Microbiome Interpretable Temporal Rule Engine

A simplified pipeline for ctDNA sequencing data analysis

The Ontology for Biomedical Investigations

Curated list of bioinformatics formats and publications