452 Open source projects that are alternatives of or similar to flexidot

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

A modern genome browser built with JavaScript and HTML5.

Python Programming for Biologists

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Scripts to download genomes from the NCBI FTP servers

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

DOM Text Based Multiple Sequence Alignment Library

Biological sequences for the julia language

Fast alignment and preprocessing of chromatin profiles

Java utilities for Bioinformatics

Curated (meta)list of resources for Biology.

Ten Quick Tips for Deep Learning in Biology

Global Biotic Interactions provides access to existing species interaction datasets

Race and ethnicity Imputation from Disease history with Deep LEarning

Sequence alignment tools

An open-access bioinformatics text

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

A powerful open source data warehouse system

No description or website provided.

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Read and write FASTQ and FASTA efficiently from Python

Method to optimally select samples for validation and resequencing

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

🎯 Human transcription factor target genes.

Bystro genetic analysis (annotation, filtering, statistics)

Ploidy agnostic phasing pipeline and algorithm

Rapid determination of appropriate reference genomes.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

A Python platform for Structural Bioinformatics

Stacked Denoising AutoEncoder based on TensorFlow

Mulled - Automatized Containerized Software Repository

Fast hash function for DNA sequences

API for linked biological knowledge

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Golang for Bioinformatics

Simple pure Python SAM parser and objects for working with SAM records

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A Kotlin DSL and library to create and plot RNA 2D structures

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Assembling the cause of phenotypes and genotypes from NGS data

Useful bioinformatic scripts

Unsupervised domain adaptation method for relation extraction

Compute N50/NG50 and auN/auNG

Open source Java library for computational proteomics

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

MView extracts and reformats the results of a sequence database search or multiple alignment.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

The Aquarium Lab Operating System

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Streamlining SLAM-seq analysis with ultra-high sensitivity

A curated list of resources for machine learning for small-molecule drug discovery

Improving genome bins through the combination of different binning programs