424 Open source projects that are alternatives of or similar to mview

GWAS summary statistics files QC tool

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Genomics data visualization in Python by using matplotlib.

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Golang for Bioinformatics

dysgu-SV is a collection of tools for calling structural variants using short or long reads

GNparser normalises scientific names and extracts their semantic elements.

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Open source Java library for computational proteomics

Toolkit for preparing genomes for submission to NCBI

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

API for linked biological knowledge

GRAph-based Finding of Individual Motif Occurrences

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

The BridgeDb Library source code

A Kotlin DSL and library to create and plot RNA 2D structures

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

Computational Analysis of Novel Drug Opportunities

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

The Ensembl Compara Perl API and SQL schema

A simple command-line tool to download data from Joint Genome Institute databases

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

A Go package for engineering organisms.

PERF is an Exhaustive Repeat Finder

Fast hash function for DNA sequences

Classify sequencing reads using MinHash.

🎯 Human transcription factor target genes.

Single Cell Analysis Pipelines

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Version 5 of the CAFE phylogenetics software

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

Simple pure Python SAM parser and objects for working with SAM records

A permissively licensed library designed to replace Illumina's Experiment Manager

Ploidy agnostic phasing pipeline and algorithm

Genomics using open source tools, running on GCP or AWS

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

A curated list of resources for machine learning for small-molecule drug discovery

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

A faster lmm for GWAS. Supports GPU backend.

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

A modular annotation tool for genomic variants

Feature extraction algorithm for genomic data

Streamlining SLAM-seq analysis with ultra-high sensitivity

Frequently used commands in bioinformatics

Bioinformatics library in Kotlin

Read and write FASTQ and FASTA efficiently from Python

Improving genome bins through the combination of different binning programs

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

An R package for reproducible and automated ADMIXTOOLS analyses

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

WebGL Heatmap Viewer for Big Data and Bioinformatics