178 Open source projects that are alternatives of or similar to NeuroCore.jl

NeuroInformatics Database

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

medical image visualization library and development toolkit

Software platform for clinical neuroimaging studies

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Multi-modal Image Registration And Connectivity anaLysis

Elephant is the Electrophysiology Analysis Toolkit

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

Method container for computational neuroscience on brains.

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Graph theory analysis of brain MRI data

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

MATLAB/Octave GIfTI Library

The MATLAB toolbox for MEG, EEG and iEEG analysis

Brain Imaging Analysis Kit

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

All things Miniscope v4

Flow-based synchronized parallel DAQ from diverse sources and flexible control for neuroscience experiments

Keras for Science

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

Coordinate- and image-based meta-analysis in Python

Train PyTorch Models using the Genetic Algorithm with PyGAD

Code Generation Framework For NEURON MODeling Language

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

Neuroimaging in Julia

Utility functions for working with DICOM and BIDS neuroimaging data

A lightweight python module to interact with atlases for systems neuroscience

A virtual optogenetics laboratory

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

📊 Gene expression in neuroexpresso database

FSL-R Interface package

Python 3 library for analysis of neuroanatomical data

Segmentation of 3D shapes in a common anatomical space

A toolbox for inferring spikes from calcium traces.

Deep learning in a spiking neural network using segregated dendrites.

Dynamic Time Warping in Python / C (using ctypes)

3D Visualization of Brain MRI

Framework for the reproducible processing of neuroimaging data with deep learning methods

Just Another Tool for Online Studies

MATLAB / Octave tools for BIDS datasets

Spiking neural network system

Curate, visualize, annotate, and share your behavioral ephys data using Python

AntroPy: entropy and complexity of (EEG) time-series in Python

Helping researchers in routine procedures for data collection

Main TVB codebase

NEURON User Interface

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

Automated 3D cell detection and registration of whole-brain images

Python-based module with spike sorter wrappers and a simple API for running them.

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

PyoMyo - Python Opensource Myo armband library

BIDScoin converts your source-level neuroimaging data to BIDS

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

Brain Dynamics Programming in Python

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Resources for data driven neuroscientists.

Code and data for Zhang, Lengersdorff et al. (2020)

Automated 3D brain registration with support for multiple species and atlases.