192 Open source projects that are alternatives of or similar to PyRhO

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

NEURON User Interface

A brian2 extension to simulate spiking neural networks on GPUs

Multi-modal Image Registration And Connectivity anaLysis

A lightweight python module to interact with atlases for systems neuroscience

The MATLAB toolbox for MEG, EEG and iEEG analysis

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

认知计算神经联盟 讨论会

📊 Gene expression in neuroexpresso database

Brain Dynamics Programming in Python

Automated 3D brain registration with support for multiple species and atlases.

A package for data-driven validation of neuron and ion channel models using SciUnit

Open resource exchange platform for non-human primate neuroimaging

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

A publicly-editable collection of open computational neuroscience resources

A curated list of awesome neuroscience libraries, software and any content related to the domain.

Software platform for clinical neuroimaging studies

A Parametric Framework to Generate Visual Illusions using Python

A multi-purpose GPU-accelerated open-source suite for brain data visualization

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

Visualizer for large-scale and interactive ray-tracing of neurons

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Curate, visualize, annotate, and share your behavioral ephys data using Python

Neuroscience information exchange format

A suite of tools for medical image processing focused on brain analysis

An Awesome List of Cognitive Science Resources

A terminal app written in Node.js to monitor brain signals in real-time

Brain Segmentation on MRBrains18

A block modeling system for cognitive neuroscience

Elephant is the Electrophysiology Analysis Toolkit

spiking-neural-networks

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

Method container for computational neuroscience on brains.

The Arbor multi-compartment neural network simulation library.

Pydra Dataflow Engine

Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation

Python-based module with spike sorter wrappers and a simple API for running them.

A Python-based module for creating flexible and robust spike sorting pipelines.

Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.

code for storing neurodata images and image annotations

Python library for easy creation and running of spiking neural networks in tensorflow.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

MATLAB/Octave GIfTI Library

NeuroInformatics Database

C++ library for simulation of multiscale neural field dynamics

Python machine learning package based on sklearn API for multivariate data processing and statistical analysis of symmetric positive definite matrices via Riemannian geometry

Python 3 library for analysis of neuroanatomical data

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Recordings of 10k neurons during spontaneous behaviors

Graph theory analysis of brain MRI data

Deep learning integration for Nengo

Computational Neuroscience Crash Course (CNCC 2019)

Code Generation Framework For NEURON MODeling Language

p5.js Jupyter Widget

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

The PyTorch Implementation of Variable Optimizers/ Neural Variable Risk Minimization proposed in our Neural Computation paper: Artificial Neural Variability for Deep Learning: On overfitting, Noise Memorization, and Catastrophic Forgetting.

A python and C++ library for reading and writing neuronal morphologies

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`