140 Open source projects that are alternatives of or similar to Repo-Bio

A curated list of awesome bioinformatics software.

A python wrapper for the benchling api

3d engine implementation in DNA code!

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Sequence alignment tools

RNAcentral website source code

Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences

Data collection, equipment control, and imaging engine for environmental IoT applications. Runs on RPi/ARM and interfaces with Arduino/ATmega minions over serial.

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Cellular Automata Simulator

Fast API server for calculating linkage disequilibrium

tools for reading, writing, merging, and remapping SNPs

View biological networks via Cytoscape.js and sbgn-ml

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

CellRank for directed single-cell fate mapping

A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.

Research on polio / protein folding.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

waka waka

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

A fast 23andMe DNA parser and inferrer for Python

No description or website provided.

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

A tool to plot significant regions of GWAS

CoRA Docs

Numerical Encoding for Human Genetic Variants

Genome-wide imputation pipeline

A package for designing activity-informed nucleic acid diagnostics for viruses.

LDraw — awesome software, file format, parts library and model repository (3D models of LEGO® and LEGO-compatible bricks)

Code to compute the XP-CLR statistic to infer natural selection

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

plant collections manager (desktop version)

Rare variant test software for next generation sequencing data

Forward-time simulation in Python using fwdpp

A Framework for Coalescent Simulation in R

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

The consensus GEM for Saccharomyces cerevisiae

Datastructures and algorithms for working with genetic variation

A web application to visualize and edit pathway models

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Genetics (Initialization, Selection, Crossover, Mutation)

Software for writing protocols and running them on the Opentrons OT-2

A standalone and free application to explore genetics variations from VCF file

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

A taxonomic toolbelt for R

Predict AMPs in (meta)genomes and peptides

A powerful open source data warehouse system

Ultrafast sequence typing and gene detection from NGS raw reads

An interactive heatmap visualization built using D3.js

Ten Quick Tips for Deep Learning in Biology

A data-driven approach for interactively synthesizing diverse images from semantic label maps.

Manhattan plot Generator

Curated (meta)list of resources for Biology.

Blender plugin to process biological data and molecular work.